Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq382 181 9e-41 >seq382 Length=26401 Score = 181 bits (200), Expect = 9e-41 Identities = 404/596 (68%), Gaps = 14/596 (2%) Strand=Plus/Plus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || ||||||||||| || || || |||||||| | ||| | ||| || || Sbjct 6110 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCACCGATAACGTGAATAAATTCACCA 6169 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || |||| || | || || || | || ||| || | |||||||| || |||||| Sbjct 6170 GGTTTCAGCCCTGCCACTTGTGCCACTAGTCGCGTGAGCAACGCGTAGCTTGCAATGTTA 6229 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 ||||| || || |||||||| ||||| || | |||||||| ||| || |||| || || Sbjct 6230 AACGGCACACCAAGGCCCATATCGGCCGAGCGCTGGTACATCTGACACGACAATTCGCCG 6289 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164 |||||||| ||||| || || | |||||| || || || |||||| || || Sbjct 6290 TCCGCCACGTAGAACTGGCAGAACATGTGACACGGCGGCAGTGCCATCTCATTCAGATCA 6349 Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATC--GTGGGGCCGCCTGTTAATTA-GA 21221 || ||||||||||| ||| ||||| || || || ||| || | ||| || Sbjct 6350 GCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCATCGGGTTCGTACGCAGCTTATGA 6409 Query 21222 TCCACCAC-GTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCT 21280 |||| | ||| ||||||||||| ||||| || ||| | |||| || | Sbjct 6410 ATCACCTCAGTA----AGCTGGTCCACTCCCTGTCCAGTGTAATCTGCGTGCATGTCCGT 6465 Query 21281 GTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCG 21340 ||||| || |||||||| | ||||||||| ||||| ||||| || ||||| || | Sbjct 6466 GTACTTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACCGGTCCGAGATCACCTACTTC 6525 Query 21341 GCG-GTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTT 21399 ||| ||| | || || | ||| | | | |||||||| | | ||||||| || | Sbjct 6526 GCGCGTCTGC-AATCCTCGGCTATCCAGATACTCCCGGGACCCATTCCCGTCCCAGATGT 6584 Query 21400 TTACGCCGCGGCGCGACAGTTCG-GTG-GAGTCGGTGGAGCCCCTGATAAACCACAGCAA 21457 | | | || ||| || ||| | | ||| ||| |||||||||||||||| Sbjct 6585 GAATGTCCTTCTGCTGCAG--CGTGTGCGCGCTCGTGTCGCCGCTGATAAACCACAGCAG 6642 Query 21458 CTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGT 21513 ||||||| | ||||| | ||| ||||| | ||||| || | ||| || ||| ||| Sbjct 6643 CTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGT 6698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427747111885680