Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq391 176 7e-39 seq369 165 1e-35 seq382 109 8e-19 >seq391 Length=25901 Score = 176 bits (194), Expect = 7e-39 Identities = 597/914 (65%), Gaps = 46/914 (5%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| | | || ||| | ||| | |||||||| ||||| |||| || || Sbjct 1295 CTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTC 1236 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| ||| | || ||| | |||||| | || |||| || | |||| Sbjct 1235 TGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGGGAACC---TGACC 1179 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| | || || |||| | |||| ||||| || | | ||| || ||| Sbjct 1178 GACAACGAGCGTCACTTCATCAAGCACGTGCTGGCGTTCTTCGCTGCCAGCGACGGCATC 1119 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TG 125233 || ||||| || ||| || ||| | ||| || | || |||| ||| || Sbjct 1118 GTGAACGAGAACCTGGCGATGAACTTCAGCAATGAGGTGCAGGTGCCGGAGGC-TCGCTG 1060 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| ||||| ||| || |||||| | |||||||| ||||||| ||||| Sbjct 1059 CTTCTACGGCTTCCAGATCGCTATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGAT 1000 Query 125294 TGACATGTACATTCGCGAT-CCGCAACGTA--AACACATGCTCTTTAACGCAATCGACAC 125350 |||| ||||| || ||| | | | ||| |||| | || ||||| || Sbjct 999 CGACACATACATCAAGGACGCCGTGGAGAAGGATCACCTGCTGCGT---GCCATCGAGAC 943 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | | |||| | || ||||| | |||| | | |||| || | ||| Sbjct 942 GATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACCCTCGCGTGTC 883 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TA 125469 || ||| | || | ||| |||| ||||| ||||| |||||||| ||||| ||||| | Sbjct 882 GTCCTACCCGGAGCGCCTGCTGGCGTTCGCTGCCGTGGAGGGCATTTTCTTCTCGGGCTC 823 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 || ||| ||||||| |||||||| |||||||| |||||||| || |||| | | Sbjct 822 CTTCTGCT-CCATCTTCTGGCTCAAAAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGA 764 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC---CAT--TCTACT--- 125581 ||||| | || || ||||||||| | ||| ||||| || | | | |||| Sbjct 763 ACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCGA 704 Query 125582 -GTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTG 125640 ||| ||| | |||| | ||| || ||| || | | || | Sbjct 703 AGTTGGTGAACAAGCTGCC--------GGAGAGCC-GCG-TGCACGCG--------ATCG 662 Query 125641 TAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATG 125699 | || || ||| ||| || || ||||| | | || ||||| || || ||| || Sbjct 661 TGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGTGATTCCCTCCCCGTGGAGC-TG 603 Query 125700 ATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG 125759 || |||||||||| ||| |||||| | ||||| ||||| ||||| || || || || Sbjct 602 ATCGGCATGAACTCTGCGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTGTTG 543 Query 125760 TACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC 125819 ||| | || || |||||| ||||||| ||||| || || || | ||| || Sbjct 542 TACTCGCTGGGTGCGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATG 483 Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAACGCT 125877 || || ||| |||| ||||||||||| || |||||| || ||||||| | || ||| Sbjct 482 ATCTCGCTACAGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTACTCCAAGGCT 423 Query 125878 ACGGTGTCGGTGTC 125891 ||||| |||||| Sbjct 422 --GGTGTGGGTGTC 411 >seq369 Length=26862 Score = 165 bits (182), Expect = 1e-35 Identities = 338/496 (68%), Gaps = 10/496 (2%) Strand=Plus/Minus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAAC 96965 ||| ||||| |||| || |||||||| ||||| || || || | ||| |||| || || Sbjct 5648 GCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGTAAGAA- 5590 Query 96966 TCTGGCTTTGAAGAGGCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTT 97024 || | | || |||| | || | ||||||||||| || || ||||| || ||| | Sbjct 5589 TCACGGTAACGAGCTGCACCGCGCGCGCGACTTGTTTTACGCTCTGTGGGTCCCCGATCT 5530 Query 97025 GTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACC 97084 ||||||||||||||| | | |||| | |||||||| | |||||| || | | || Sbjct 5529 GTTCATGAAGCGCGTGGAGGCGAATGGCAAGTGGAGCCTGTTCTGCCCCAACGAGGCCCC 5470 Query 97085 CGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGA 97144 ||| || | ||| ||||||||||| ||||| ||| | |||| | |||||| | || Sbjct 5469 CGGACTCTACGAGTGCTGGGGCGACGAGTTCGAGACGCTGTACGAGAAGTACGAGAAGGA 5410 Query 97145 GGGCCG-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTC 97203 ||| || || |||||| || | || | | |||||| |||||| || || | Sbjct 5409 GGGACGCGCGCGCAAGACGA-TCAACGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGC 5351 Query 97204 AGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACC 97263 || | ||||| || |||| ||| || |||||||| | | || ||||| |||| Sbjct 5350 AGATTGAGACAGGCGTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACC 5291 Query 97264 AACGCCACTTGGGCACCATCAAGGGCTC---CAATCTGTGCACGGAAATTGTAGAGTACG 97320 | | || | ||||| ||| |||| ||| ||||| || ||| | |||||| Sbjct 5290 AGCAGAACCTCGGCACGATC---CGCTCAAGCAACTTGTGCTGCGAGATTATGGAGTACA 5234 Query 97321 CCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAG 97380 | || || || ||| ||| || ||| ||||| || || || ||||||||||| | Sbjct 5233 CGTCGCCCGATGAGGTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGG 5174 Query 97381 AGGGTAAAGTGTTTAA 97396 ||| | |||||| || Sbjct 5173 AGGATGGAGTGTTCAA 5158 Score = 96.9 bits (106), Expect = 5e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || ||||| || | ||| | || | || || | || ||| | || Sbjct 4502 TACAAGACAGTGTGGGAAATCAAGCAGAAGGCCGTGTTGGACCTGTCGGCGGACCGTGGC 4443 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | ||||||| |||||| || ||||| || | || ||||||| || || |||| Sbjct 4442 GCCTACATTTGCCAGAGCCAGTCGTTGAACATTCACATTGCCGACCCGACGATCAGTAAG 4383 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 |||| || || ||||| ||||| ||||| ||||| |||||||||||||||||||| Sbjct 4382 TTGACGTCCATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACGGGCATGTACTA 4327 >seq382 Length=26401 Score = 109 bits (120), Expect = 8e-19 Identities = 275/410 (67%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || ||||| || || || ||||| ||||||||| | || | ||| ||||||| ||| Sbjct 6519 GGTGATCTCGGACCGGTCTACGGCTTCCAGTGGCGCCATTTTGGCGCCAAGTACACGGAC 6460 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACACTC 70184 ||| | |||| || | || ||||| || || || || | || | ||| | | | Sbjct 6459 ATGCACG-CAGATTACACTGGACAGGGAGTGGACCAGCTTACTGAGG-TGATTCATAAGC 6402 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || || || | || | ||||||| ||| | ||||| ||||| ||| || Sbjct 6401 TGCGTACGAACCCGATGGACCGCCGGATCGTGTTGTCTGCGTGGAACCCTGCTGATCTGA 6342 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAA 70303 | | |||||||| || ||||||||| |||| || ||||| ||| | || ||| || Sbjct 6341 ATGAGATGGCACTGCCGCCGTGTCACATGTTCTGC-CAGTTCTACGTGGCGGACGGCGAA 6283 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 ||||| || ||||| ||| | ||||| |||||||| ||||| || ||||||||| Sbjct 6282 TTGTCGTGTCAGATGTACCAGCGCTCGGCCGATATGGGCCTTGGTGTGCCGTTTAACATT 6223 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG 70423 |||||||| | || | |||| | | || || | | || |||||| | || Sbjct 6222 GCAAGCTACGCGTTGCTCACGCGACTAGTGGCACAAGTGGCAGGGCTGAAACCTGGTGAA 6163 Query 70424 TTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 || | ||| || || ||||| || |||||| | || ||| | ||||| Sbjct 6162 TTTATTCACGTTATCGGTGACGCGCATGTGTATCTGAACCACGTTGAGCC 6113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741007872387160