Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq386 140 3e-28 >seq386 Length=26155 Score = 140 bits (154), Expect = 3e-28 Identities = 194/269 (72%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||||||| ||||| ||||| || || | |||| || || | ||||||| Sbjct 10027 ACGCCCGTGCTGCCGAAGCCGCCGGCTCCGCGCGCCGTGTCCTCGATCTCTTCCACCTCC 10086 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620 | ||| || ||| || | ||| |||||||||||| | ||||| ||| ||| Sbjct 10087 TGCACCTCCGGGTACTCGATCTTCTCAAGGATCAGCTGCGCCACGCGGTCCCCCCGCTTG 10146 Query 5621 ACCTCGAAATCGTT-GTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 ||| ||| || | || || ||||||||| | |||||||||||||||||||||||| Sbjct 10147 ACCGGGAAGTCCTCAGTCGCATG-GTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTC 10205 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 ||| || ||||| || ||||| ||||||||| | ||| | || || |||||||| || Sbjct 10206 GGCATCGATCACACCGGCGCCAGTGTCGATGAACTTCTTAAGTGCGAGTCCGGAGCGCGG 10265 Query 5740 AGCCACGCGGCCGTAGCACCCATCGGGAA 5768 |||||||| |||| || ||| |||||| Sbjct 10266 CGCCACGCGCGCGTAACATCCAGCGGGAA 10294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430025358023192