Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq690 98.7 9e-16 >seq690 Length=17146 Score = 98.7 bits (108), Expect = 9e-16 Identities = 226/335 (67%), Gaps = 9/335 (3%) Strand=Plus/Plus Query 94088 CCCCAGAGCATGAACACCAGCTTGGGGCGGGTCTC-GCAGAGCCGCTGGACGACGGCGCG 94146 |||||||||| |||||| | |||| | | |||| || || | || ||||||| Sbjct 11928 CCCCAGAGCAGGAACACGACGTTGGAG-GCGTCTTTGCTGATCTTGGAGATGACGGCGTC 11986 Query 94147 CACGAGCCGCGCCCAGCCGAGCGGGGCGTGGGAGCCGGGGACCCCGCGCCGCACGGTCAG 94206 || | || |||||||| || ||| ||| || | || || || || || || Sbjct 11987 GGTGAACTGCTCCCAGCCGCGCTTTTTGTGCGAGTTGGCCTCGCCTCGACGGACTGTGAG 12046 Query 94207 CGTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGGGCGGG 94266 | |||||| ||||||||||| || |||| |||| ||| |||||||| | ||| Sbjct 12047 CACCGTGTTGAGCAGCAGCACTCCCTGGCGGCTCCAGCAGGACAGACAGCCGTGCGAGGG 12106 Query 94267 -CGCGGGCAGCGTCGGGTACGTCGCCCG-GACCGCCGCGAAGATGTTGGCCAGGCTCGGG 94324 |||| | || ||||||| | | || || | ||||||| |||||||| Sbjct 12107 GCGCGAGATGCCC-----ACGTCGCTCATGGCCTCCTTGTAGATGTTCTTGAGGCTCGGC 12161 Query 94325 GGGATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGGGCCTGGCCCGGCCCGTGG 94384 || ||| | ||| | || ||| |||| ||| ||||| ||||| ||| |||||| Sbjct 12162 GGCGGCGGGATGCCGTGGCGCACGGAGAAGCTCAGTCCGTGCGCCTGCTGCGGTCCGTGG 12221 Query 94385 TACGGGTCCTGGCCGATGATGACCACCTTGACGTC 94419 ||||||||||| || | || |||||||||| ||| Sbjct 12222 TACGGGTCCTGCCCCAGAATCACCACCTTGAGGTC 12256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458915412169560