Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq12 159 5e-35 >seq12 Length=85114 Score = 159 bits (176), Expect = 5e-35 Identities = 181/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | |||||| || ||||||||||| ||||||||||| || || Sbjct 1627 CGCCAAGCGTCACCGTAAGGTTCTTCGCGACAACATCCAAGGCATCACCAAGCCCGCCAT 1686 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || || |||||| |||| || | |||| || |||| Sbjct 1687 CCGTCGTCTCGCACGTCGTGGCGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 1746 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| |||||||| ||| |||||||| || | || ||| || || Sbjct 1747 CCGCGGTGTGCTCAAGGTCTTCCTCGAGAACGTTATCCGCGACTCGGTCACCTACACGGA 1806 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| ||||| || || || ||||||| |||| || || | || ||||| || Sbjct 1807 GCACGCTCGCCGTAAAACCGTGACGGCCATGGACGTCGTGTACGCTCTTAAGCGTCAGGG 1866 Query 16672 CCG 16674 ||| Sbjct 1867 CCG 1869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070133824913