Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq369 289 7e-73 seq382 154 4e-32 >seq369 Length=26862 Score = 289 bits (320), Expect = 7e-73 Identities = 635/946 (67%), Gaps = 4/946 (0%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || |||||||| ||||| || | | || || || || | ||| ||| |||| || Sbjct 5948 TTTACGCACGCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCG 5889 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || ||| ||||||| || || ||||| || | ||||| || ||| | Sbjct 5888 TGCTTCCTGCTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAG 5829 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || |||||| || || || ||||| | || ||||| | || || Sbjct 5828 TGCGCGTGCATCTCCAAGTGGGCCGGAGGTATTGGCATTAGTATGCACAACATCCGCGCC 5769 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 |||||| ||||| |||||||| |||| || || ||| | | |||||||| | Sbjct 5768 ACGAACAGCTACATCCGCGGCACGAACGGATCATCCAACGGGATCATCCCCATGCTGAGG 5709 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || || || | || || | || || |||||||| ||||| ||||||||||| |||| Sbjct 5708 GTCTTCAACGACACGGCTCGCTATGTGGACCAGGGCGGAGGCAAGCGCAAAGGATCGTTC 5649 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA- 363905 || || || || ||||| || ||||| | || ||||| || ||||| || || || Sbjct 5648 GCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGTAAGAAT 5589 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 ||||| || ||| || || || || |||| || || || ||||| | || | Sbjct 5588 CACGGTAAC-GAGCTGCACCGCGCGCGCGACTTGTTTTACGCTCTGTGGGTCCCCGATCT 5530 Query 363966 TTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCC 364025 || ||||||||||||||||| | || ||| || || ||||| |||| || Sbjct 5529 GTTCATGAAGCGCGTGGAGGCGAATGGCAAGTGGAGCCTGTTCTGCCCCAACGAGGCCCC 5470 Query 364026 AGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGA 364085 || || | ||| ||||| ||||| | | | || ||||| ||||| || ||| Sbjct 5469 CGGACTCTACGAGTGCTGGGGCGACGAGTTCGAGACGCTGTACGAGAAGTACGAGAAGGA 5410 Query 364086 GGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCA 364145 |||| || || ||||| || ||| ||| |||| ||||| |||||| |||| |||| Sbjct 5409 GGGACGCGCGCGCAAGACGATCAACGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGCA 5350 Query 364146 GATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCA 364205 |||||||||||| || | ||| ||||||| || || |||||||||||| ||||| Sbjct 5349 GATTGAGACAGGCGTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACCA 5290 Query 364206 GCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGC 364265 |||| |||| || || || | |||||| | || ||||||||| || ||||| | Sbjct 5289 GCAGAACCTCGGCACGATCCGCTCAAGCAACTTGTGCTGCGAGATTATGGAGTACACGTC 5230 Query 364266 TCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGA 364325 ||||| ||| || || || ||||| ||||| | || || || |||||| | || Sbjct 5229 GCCCGATGAGGTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGAGGA 5170 Query 364326 TGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGA 364385 ||| || || ||||| | || || || || ||| | | || | || | | Sbjct 5169 TGGAGTGTTCAACTACCAGAAGCTGTACGAGGTGACCAAGGTGGTGACCCGGAACTTGAA 5110 Query 364386 CAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGTC 364444 ||||| || || || || || || || | || | || || || ||||| | Sbjct 5109 TAAGGTCATTGATGTCAACTACTA-CCCCGTCGAGGAGGCACGCAAGTCCAACATGCGCC 5051 Query 364445 ATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 | |||||| ||||| ||||||| ||||| ||||| || | ||||| Sbjct 5050 ACCGCCCGGTTGGTATTGGTGTCCAGGGTCTCGCGGATGCATTTAT 5005 >seq382 Length=26401 Score = 154 bits (170), Expect = 4e-32 Identities = 322/473 (68%), Gaps = 10/473 (2%) Strand=Plus/Minus Query 111482 CGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTA 111541 ||||| ||||||||||||||| || ||||| || || |||||||| ||||| || | || Sbjct 6526 CGAAGTAGGTGATCTCGGACCGGTCTACGGCTTCCAGTGGCGCCATTTTGGCGCCAAGTA 6467 Query 111542 CAAAACCATGCACGACTCATATGATTC---ACAGGGAACTGATCAA-TTACAGAATGTCA 111597 || |||||||| || || | | ||||||| || || |||| || || | Sbjct 6466 CACGGACATGCACG---CAGATTACACTGGACAGGGAGTGGACCAGCTTACTGAG-GTGA 6411 Query 111598 TTGATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCA 111656 || || || | | || ||||| | || || || | || ||| |||||||| Sbjct 6410 TTCAT-AAGCTGCGTACGAACCCGATGGACCGCCGGATCGTGTTGTCTGCGTGGAACCCT 6352 Query 111657 AATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACAC 111716 || || | | |||||||| || || ||||| | | |||||||| || || Sbjct 6351 GCTGATCTGAATGAGATGGCACTGCCGCCGTGTCACATGTTCTGCCAGTTCTACGTGGCG 6292 Query 111717 GACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCG 111776 ||||| | || || || ||||| ||||| || || ||||| || |||||||| ||| Sbjct 6291 GACGGCGAATTGTCGTGTCAGATGTACCAGCGCTCGGCCGATATGGGCCTTGGTGTGCCG 6232 Query 111777 TTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAA 111836 ||||| |||||||| ||||| | || || | || | || || | || || ||| Sbjct 6231 TTTAACATTGCAAGCTACGCGTTGCTCACGCGACTAGTGGCACAAGTGGCAGGGCTGAAA 6172 Query 111837 CCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCA 111896 || |||||||| |||||||||||||| || |||||||| || |||||| |||| | Sbjct 6171 CCTGGTGAATTTATTCACGTTATCGGTGACGCGCATGTGTATCTGAACCACGTTGAGCCT 6112 Query 111897 CTTAAAACACAGTTGAAGCGCAAACCATACGATTTCCCAACGATTCATATCAA 111949 ||| ||| ||| | | ||| ||| ||||||||| |||| || || Sbjct 6111 CTTCAAAAGCAGCTTACGCGTTCACCGCGGCCATTCCCAACGCTTCACATTAA 6059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303261069633062