Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq369 273 2e-68 seq33 152 5e-32 seq138 141 9e-29 seq738 107 2e-18 seq41 87.8 2e-12 >seq369 Length=26862 Score = 273 bits (302), Expect = 2e-68 Identities = 1127/1750 (64%), Gaps = 42/1750 (2%) Strand=Plus/Plus Query 144751 GCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGACGT 144810 ||||| |||||||||||||| ||||| ||| ||| | |||| ||| || ||||| Sbjct 4320 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGT 4379 Query 144811 CATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAATGAA 144870 || | | | ||| || || || | | || | ||| ||||| || |||| | Sbjct 4380 CAACTTACTGATCGTCGGGTCGGCAATGTGAATGTTCAACGACTGGCTCTGGCAAATGTA 4439 Query 144871 AGCGTTGCGGTCGGCGGCCATCTCAATCATA--CGTTTGCATTTCATTTCCCAAGCGGTC 144928 ||| ||||| || | || || | || | | ||| || |||||||| | ||| Sbjct 4440 GGCGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGC--TTGATTTCCCACACTGTC 4497 Query 144929 TTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTGTGC 144988 |||||| || | |||||||||||| | | | ||| | || || || Sbjct 4498 TTGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCA 4557 Query 144989 GCAAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCGTCAATT 145048 || | || ||| |||| || | ||| | | | | || ||||| || | || Sbjct 4558 GCCAGGATCTGGTTGCGCACCTCAGGCGTCCAGATTCCCAGCTCGATCAGCTCTTTCATG 4617 Query 145049 AAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGAC 145108 | ||||| || |||| | ||||| || |||| ||| || || |||| ||| ||| Sbjct 4618 AGGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGAC 4677 Query 145109 GTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATG 145168 || | || || | |||||||| ||||||| || ||||| |||| || |||||||| Sbjct 4678 GTATACGGCTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATC 4737 Query 145169 TACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCC 145228 ||||| | | || ||||| | ||||||||| | | || ||||| |||| | | Sbjct 4738 GGAGCCACGAGGAGCGAGTTGCGTATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGTC 4797 Query 145229 CAATCCCATAGC---GAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCG 145285 || ||||| | |||| ||| ||||| ||||||||||| |||| || || |||| | Sbjct 4798 CAGTCCCACAAACCGGAAGACGGGGTCACGCCCCACATGTCGAACTGGAAGATACCCTTG 4857 Query 145286 CTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAAC- 145343 ||||| || ||| || || | || || | |||| | ||||||| ||| || | Sbjct 4858 CTGGCAGGCGAGCCCTGGAACG-TCTCGTACGGGCCCAGCTCCTTGGCGATCTC-CATCG 4915 Query 145344 TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTT 145403 || ||||| || || | || || |||||| || | | ||||||| |||| Sbjct 4916 ACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGGCTT 4975 Query 145404 CATCGCTCTCGTACGGCAT-GCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCC 145462 ||||||| || |||| | || || | ||| ||||| ||||| ||||| | || Sbjct 4976 GCGGGCTCTCGAAC-GCATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGACACCA 5034 Query 145463 ACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATT 145521 | || | || || || ||||||| | | | ||| ||||| || || | | | Sbjct 5035 ATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGTGCCTCCTCGACGGGGTAGTAGTTG 5094 Query 145522 ACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTC 145581 || || || | ||||||||||| || || ||||| || | | || ||| | Sbjct 5095 AC-ATCAATGACCTTATTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGCTTCTG 5153 Query 145582 AAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATT 145641 ||| ||| ||| || | ||||| | | || ||| | ||||||| || Sbjct 5154 GTAGTTGAAC----ACTC--CATCCTCCACAAACTTGGGGAGGGCCACAGACGCCAGGTT 5207 Query 145642 ACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTAC 145700 || || ||| ||| || |||| || |||| | | |||||| |||||| ||||| Sbjct 5208 GCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAATCTCGCAGCACAAGTTGCTTG 5266 Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 | ||| || || || || ||||| || || | |||| |||||||||||| |||| Sbjct 5267 AGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCA 5326 Query 145761 TGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTCCTGCGC 145818 || |||| |||| ||||| | ||||| |||| ||| ||| || | ||| || Sbjct 5327 TGAACGGCACGCCTGTCTCAATCTGCGCGTCCAGGATGGCGAAC--CACAGCTGCTGGGC 5384 Query 145819 ACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGC 145878 | | || | ||| ||||| | ||||| ||| ||| ||| ||| ||| | Sbjct 5385 GTTGATCGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTCTCGTACAGCGTCTCGAACTC 5444 Query 145879 GGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCC 145938 | || |||| ||| | || ||||| || |||||| || | ||| ||| ||| Sbjct 5445 GTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCGTTGGGGCAGAACAGGCTCCACTTGCC 5504 Query 145939 GTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT--CG 145996 || || | ||||||| ||| |||| ||| || |||||||| ||||| | ||||| || Sbjct 5505 ATTCGCCTCCACGCGCTTCATGAACAGATCGGGGACCCACAGAGCGTAAAACAAGTCGCG 5564 Query 145997 CGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTT---CAAATTAAGCACACT-ATAGAT 146052 ||||| |||| ||| | || || || ||| || | || | ||| | | Sbjct 5565 CGCGCGGTGCA--GCTC-GTTACCGTGATT--CTTACGCAGCTCCAGGA-ACTCGAACAC 5618 Query 146053 GTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTG 146109 ||| ||||||||||| || | |||| ||||| | |||||| || ||| || ||||| Sbjct 5619 GTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGATCCTTTGCGCTTGCCTCCGCCCTG 5678 Query 146110 GTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTAC 146169 |||||| | || || ||| ||| ||||| | || |||||| || ||| ||| | Sbjct 5679 GTCCACATAGCGAGCCGTGTCGTTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATGA 5738 Query 146170 GCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAG 146229 |||||||| | || | || || ||| | | || | | | | ||| | Sbjct 5739 TCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTAATGCCAAT 5798 Query 146230 ACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAAT 146289 ||| ||| | ||||||| || ||||| | |||||| ||||| ||||| ||||| Sbjct 5799 ACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAAT 5858 Query 146290 GCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGC 146349 ||| | ||| | ||||| |||||||| ||| ||||| |||||| || || Sbjct 5859 CGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGTGCCGGC 5918 Query 146350 CGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTC 146409 || | ||| || ||||||||||||| | | | ||| | | ||||| | Sbjct 5919 GTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGACATGAGCTCGTACGTGTG 5978 Query 146410 GATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTG 146469 | || | || ||||| | || || |||| || |||||||||| ||| || || Sbjct 5979 CAGTGCCGCCTGGATGTCTTGCTTGTGGATACCCAGCGCCACGCGCATGATCATCTGCTG 6038 Query 146470 GGGCCGCTCC 146479 ||| |||||| Sbjct 6039 GGGGCGCTCC 6048 >seq33 Length=70540 Score = 152 bits (168), Expect = 5e-32 Identities = 123/149 (83%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||||||||| | || | ||| |||||||| || |||||||| |||||| Sbjct 19136 CCACCGCGAAGACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19195 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| |||||||||||||| |||||| Sbjct 19196 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGG 19255 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || ||||| ||||| |||||||||||| Sbjct 19256 ATGCCTTCCTTGTCTTGGATTTTCTGCTT 19284 Score = 149 bits (164), Expect = 6e-31 Identities = 123/150 (82%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||||||| | || | ||| |||||||| || |||||||| ||||| Sbjct 19363 GCCACCACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCT 19422 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| |||||||||||||| ||||| Sbjct 19423 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGG 19482 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| ||||| ||||| |||||||||||| Sbjct 19483 GATGCCTTCCTTGTCTTGGATTTTCTGCTT 19512 >seq138 Length=77892 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| ||||||||| | |||| || |||||||| || |||||||| ||||| Sbjct 12963 GCCACCGCGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCT 13022 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| | || | ||||||||||| || || Sbjct 13023 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 13082 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||||||||||| | | || | | || | | ||| | Sbjct 13083 GATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCAC 13142 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | || | || || || || | ||| || ||||| |||||||| Sbjct 13143 GTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 13190 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||||||||| | |||| || |||||||| || |||||||| |||||| Sbjct 12736 CCGCCACGTAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 12795 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| | || | ||||||||||| || ||| Sbjct 12796 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 12855 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||||||||| | | || | | || | | ||| | | Sbjct 12856 ATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACG 12915 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || || || | ||| || ||||| ||||||||| Sbjct 12916 TCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 12963 >seq738 Length=22000 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 12301 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 12242 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || ||||| ||||| ||||| |||||||||||||| | | Sbjct 12241 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 12182 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | |||| | ||| | ||| | || | ||| || || || || || || || | Sbjct 12181 CAATGCTGTCGGATGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAA 12122 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 12121 AGATCTGCATGA 12110 >seq41 Length=66094 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | || ||||| || |||||||| || Sbjct 28269 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTTTCCTTCTGGATGTTGTAGTCCGAA 28210 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 28209 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 28150 Query 131128 ATTCCT 131133 |||||| Sbjct 28149 ATTCCT 28144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471980107213440