Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq379 214 4e-50 seq391 176 9e-39 seq226 118 2e-21 seq369 100 6e-16 >seq379 Length=29123 Score = 214 bits (236), Expect = 4e-50 Identities = 671/1021 (66%), Gaps = 45/1021 (4%) Strand=Plus/Minus Query 279355 TGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCC 279414 |||| |||| || ||||||||||| |||||||| | ||||||||| ||| |||||| Sbjct 19013 TGTGCAACTGCGAGTTCTCGCTCGCCTATGGTGGTATGATTCTGCTGAACAACGCCCGCC 18954 Query 279415 TCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCA 279474 | | | ||||||||| |||| || ||||| ||| ||||| || |||||| | Sbjct 18953 TTCGCCTGAAGCGTGGCCACCGTTACGGTCTGTGCGGCCCCAACGGTTGTGGTAAGTCGA 18894 Query 279475 CTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGAGGTAA 279534 | || |||||||| || | ||||||||||| || || || || | | || ||| | | Sbjct 18893 CGCTGATGCGCGCTATCTCCAACGGTCAGCTCGAGGGCTTCCCCAGCCGGTCCGAGCTGA 18834 Query 279535 GGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTTCGACT 279594 ||| |||| || |||||| || | | | || | || | ||| | |||| Sbjct 18833 AGACTGTGTTCGTTGAGCACAACCTGCAGGCTTCGGAGGCTGAGTTGTCCGTGGTGGACT 18774 Query 279595 TCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCCAGAAAC 279654 || | | || | ||| | | | || ||| ||| || | | || || Sbjct 18773 TCATCCTGGTGGA---TGAGGACCTCAAGAACACTCCTCGTGACGAGGTG--CAGGACAC 18719 Query 279655 T---GGAGGCCAATGGTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCTGTCG 279710 | ||| || ||| ||| | || |||| | | ||||| | || ||| Sbjct 18718 TCTCGGAAGCG--TGGGTTTCACCCCGGAGATGCAGGCCCAGGGTGTAGGCACCCTTTCG 18661 Query 279711 GGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTA 279770 ||||||||||||||||| || | || |||| ||||| || | | ||||| || | Sbjct 18660 GGTGGTTGGAAGATGAAACTTGAACTTGCTCGTGCCATGCTGCAGAAGGCCGACATCTTG 18601 Query 279771 CTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTAC 279830 || ||||||||||| || |||||| |||| | ||||| |||||||| | | |||| Sbjct 18600 CTTCTTGATGAGCCGACGAACCACTTGGATGTTAAGAACGTCGCCTGGCTGGAGAACTAC 18541 Query 279831 CTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGAT 279890 || || || ||| ||| || | | |||| || || ||||||||||| ||||| || Sbjct 18540 CTGACGAGCCTGCCGAACGTGACGAGCATCATGGTGTCGCACGACTCTGGTTTCCTCGAC 18481 Query 279891 GCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCACATC 279947 | || || | |||||||||||| ||| | || |||||| ||| |||| Sbjct 18480 ACGGTCTGTACCAACATCATTCACTACGAGACTCGTAAGCTGAAGATCTACAAG------ 18427 Query 279948 GGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGAAG 280007 |||||||| ||||||||||||| || |||||||| |||||||| || ||| || Sbjct 18426 GGCAACCTTTCTGCTTTCGTGGAGCAGAAGCCTGAGGCCAAGGCCTACTACGAGCTGGAG 18367 Query 280008 GACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-ACATCAAA 280066 | || || |||| ||||| ||||| || || || | | |||| | | ||| Sbjct 18366 TCTGACAACGTGAAGTTCACGTTCCCGGAGCCTGGTTTCCTTGCTGACATCAAGAACAAG 18307 Query 280067 GGATCGCGCAATCA------TGAAGCTCCGTGGCGTCTCCTTTGCTT---ATCCCAATGG 280117 || || | |||| ||| | | || ||| | | | | | ||| | | Sbjct 18306 GGTAAGC-CCATCATTCGTTTGACGAACTGT-TCGTACCAGTACCCTGGCACCCCGAAGC 18249 Query 280118 C-CCCAACATCTTCA--GCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATTGGTGT 280174 | | | || | || ||||| || || | ||| | || | || || | || Sbjct 18248 CGTCGATCAACAACATTTCAGTG---ACGTGC-GCTTTGT-CGAGC---CGTATCGCCGT 18197 Query 280175 CATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCA 280234 |||| ||||| ||||| |||||||||||| | ||||| | ||||| || ||| | Sbjct 18196 GCTTGGCCCCAACGGTGCCGGTAAGTCTACCATGATCAAGATGCTGACGGGTGAGGTTGA 18137 Query 280235 GGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 | |||| ||| || | || |||||||| || |||||| | || ||||| || || | Sbjct 18136 GCCCAC-GAGTGGCCAAGTGTGGAAGCACCCTTCCATGCGTTTCGCCTACGTGGCCCAAC 18078 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353 |||||||||||||||||||| ||||| ||| ||| | ||||| ||||| ||||||| Sbjct 18077 ACGCTTTCCACCACATCGAGTCTCACCTCGACGAGACCGCCAACCAGTACATCCAGTGGC 18018 Query 280354 G 280354 | Sbjct 18017 G 18017 >seq391 Length=25901 Score = 176 bits (194), Expect = 9e-39 Identities = 568/862 (66%), Gaps = 31/862 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||||| || ||||| | ||||| ||||||| ||||| | Sbjct 451 TCAAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCATCCAGTCGAACGGGTTCTTC 510 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 | ||||| ||||| || || | ||| || | |||||| ||||| ||||| | Sbjct 511 ACGTTGTAGATCTTGGACGCACCCAGCGAGTAC-AACAGGCGGTCGGCCACGAACTCGAT 569 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCAT----ACGACAAGGAATTGCCTCAC 251737 || || | ||| || ||||||||||||| |||| ||| ||| | | ||||| Sbjct 570 GTATTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCACGGGGAGGGAATCACTCAC 629 Query 251738 AGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAG 251797 ||| || | || | | || || || ||| || || | ||| | | | Sbjct 630 ----GAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGTGCACGCGGCTCTCCG 685 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCTC 251855 |||||||||| ||| ||| ||||||| ||| | ||| || | || ||||| ||||| Sbjct 686 GCAGCTTGTTCACCAACTTCGAGTACATGAGGCACGCGAAGTCCGT--GTGCATGCCCTC 743 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 ||| || ||||||| |||||| || | | ||| |||||||| | || || || |||| Sbjct 744 GTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTTTTGAG 803 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| | ||| ||||| || ||||| | | ||||| || | | || | Sbjct 804 CCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCACGGCAGCGAACGCCAG 863 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGA----CA-AGAACTTCTGTGCCCATGCTGCC 252030 |||||||| | | ||| | | |||| || | |||| | ||||| ||| Sbjct 864 CAGGCGCTCCGGGTAGGAC--GACACGCGAGGGTCACACCACTTGAGCGCCCAGCGGGCC 921 Query 252031 TTCTT-TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC-GCTCGGCAT 252088 ||||| |||| | | ||||| || ||||| ||| | || | | ||| ||| | Sbjct 922 TTCTTCTCCACGCAC-GGGATCGTCTCGATGGCA-CGCAGCAGGTGATCCTTCTCCACGG 979 Query 252089 CGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGA 252148 |||||| |||| | || | ||| || ||||||| |||||| |||||| ||| | Sbjct 980 CGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTCGATAG 1039 Query 252149 ACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGT 252208 |||||| | | ||||| || || || | || || || ||||| Sbjct 1040 CGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACCTCATTGCTGAAGTTCA 1099 Query 252209 TTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGA 252268 | || | |||||| |||| ||||| |||||| | || ||||| | || | | ||||| Sbjct 1100 TCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAACGCCAGCACGTGCTTGA 1159 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 ||||||||||||| | |||| | || || | |||||| | ||| || ||| Sbjct 1160 TGAAGTGACGCTCGTTGTCGGTCAG---GTTCCCCCAGTCCTTCAGGTCGTGCACCAGGT 1216 Query 252329 GAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCA 252387 | || || |||||||||| | | | |||||||||||||||| ||| |||| || Sbjct 1217 CCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACATCTGC-CACACGTCG 1275 Query 252388 GGGTACTTGATTGGGAA-AGCA 252408 | | || ||| ||||| |||| Sbjct 1276 TGCTCCTGGATCGGGAACAGCA 1297 >seq226 Length=34753 Score = 118 bits (130), Expect = 2e-21 Identities = 240/355 (68%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 218654 TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGC 218713 ||||||| || ||||| |||| ||||| || || |||| || |||||||| |||| Sbjct 23482 TTAAGGTGGCACAGTTGGCTGGCTATGTTTCGGAGCACTCTGCGTATCATCACGGAGAGC 23423 Query 218714 AGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGA 218773 ||||| |||| || ||| || ||||||||||| | || || ||||||||||| Sbjct 23422 AGAGTTTGCAAGGCTGCATCGTGAATATGGCACAGGATTTCGTTGGAAGTAACAACATCC 23363 Query 218774 ACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTT 218833 || ||||| || | ||||||||| ||| | ||||| |||| || |||||| ||| Sbjct 23362 ACCTGCTGTCGCCTATCGGTCAGTTCGGTACGCGTCTGATGGGCGGCAAGGATTCTGCCA 23303 Query 218834 CTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAAT---CAGG 218890 || | ||||| || || || ||| || | ||||| | | | | || | || Sbjct 23302 GCGCTCGTTATATTTTCACCAACTTGGAGCAGCTCACGCGGCTTATCTACGATCCGCTGG 23243 Query 218891 CCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGT 218950 | | || ||| || |||||| | || || || || || || |||||||| |||| Sbjct 23242 ACAACGACGTG---CTGAAGTATTTGGATGAAGACGGCCAGTCTATCGAGCCCGAATGGT 23186 Query 218951 ATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGG 219005 | | || || ||| | | ||||| || || |||||||||| ||||| Sbjct 23185 ACATCCCGATCATCCCGATGGTTCTCGTCAACGGCAGTGATGGTATCGGCACAGG 23131 >seq369 Length=26862 Score = 100 bits (110), Expect = 6e-16 Identities = 179/261 (69%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 294183 CCACTGGGCATCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCACATTGCGTAAAA 294242 ||||| | ||| | |||||||||||||||||| ||||| |||||||| |||||||| Sbjct 5496 CCACTTGCCATTCGCCTCCACGCGCTTCATGAACAGATCGGGGACCCACAGAGCGTAAAA 5555 Query 294243 CAAGTTGCGGGCGCGCAGGCTCTCCTCACCTTGATTACGACGGAGGAGCAGGAAGTCCAT 294302 ||||| ||| ||||| | ||| | ||| ||||| ||| || |||||| || | Sbjct 5556 CAAGTCGCGCGCGCGGTGCAGCTCGTTACCGTGATTCTTACGCAGCTCCAGGAACTCGAA 5615 Query 294303 GATGTCGGGATGATGGGGTTCCAGATACACAGCAAAGGACCCCTT---CCTGCGTCCCCC 294359 | ||||| || || ||||| || | || || || || || | ||| ||| || Sbjct 5616 CACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGATCCTTTGCGCTTGCCTCCGCC 5675 Query 294360 CTGGTTGGCGTAGGCAGATGTGGTGTCAAACACCTTCAGCATAGGCACGATGCCATCGGA 294419 ||||| | ||| || ||| || || ||| ||||||| || | ||| || | ||| Sbjct 5676 CTGGTCCACATAGCGAGCCGTGTCGTTGAAGACCCTCAGCATGGGGATGATCCCGTTGGA 5735 Query 294420 CTCACCATTGGTTCCGCGAAT 294440 || || || ||||| || Sbjct 5736 TGATCCGTTCGTGCCGCGGAT 5756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027763829689981