Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq391 389 7e-103 seq369 351 2e-91 >seq391 Length=25901 Score = 389 bits (430), Expect = 7e-103 Identities = 607/864 (70%), Gaps = 13/864 (2%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || | || ||| | ||| ||||||||||||||| || || |||||| || Sbjct 1287 GATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGC 1228 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 ||||||| | ||||||| | ||| | | ||||| | ||| | || ||||| Sbjct 1227 CGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGGGAACCTGACCGACAACGAGCG 1168 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| |||| || | ||||| |||||||| ||| |||||||| || || ||||| Sbjct 1167 TCACTTCATCAAGCACGTGCTGGCGTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAA 1108 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 |||||| | | |||| || ||||||||| ||||| ||||||||||||||||| Sbjct 1107 CCTGGCGATGAACTTCAGCAATGAGGTGCAGGTGCCGGAGGCTCGCTGCTTCTACGGCTT 1048 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 |||||| || || |||||| | ||||| ||||||||| | ||| || |||| ||||| Sbjct 1047 CCAGATCGCTATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGATCGACACATACAT 988 Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643 | ||| |||| ||| | ||| | ||||| |||||||| || ||| | | Sbjct 987 CAAGGACGCCGTGGAGAAGGATCACCTGCTGCGTGCCATCGAGACGATCCCGTGCGTGGA 928 Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703 ||||||||| |||||||||||| ||| || || || | | | | ||| | Sbjct 927 GAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACCCTCGCGTGTCGTCCTACCCGGAGCG 868 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 ||| | || || | ||||| |||||||| |||||||||||| ||||| ||||||||| Sbjct 867 CCTGCTGGCGTTCGCTGCCGTGGAGGGCATTTTCTTCTCGGGCTCCTTCTGCTCCATCTT 808 Query 42764 CTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 ||||||||| || || || ||||| || || | |||||||||||| ||||||||| Sbjct 807 CTGGCTCAAAAAGCGCGGCCTC-ATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCC 749 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 |||||||||| |||| | |||||| || |||||| ||| ||||| | | | ||| Sbjct 748 GGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCGA---AGTTGGTGAACA 692 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 ||| || || || || | || ||| | || || |||| ||| ||| | |||| Sbjct 691 AGCTGCCGGAGAGCCGCGTGCACGCGATCGTGCGTGACGCTGTGGTGATTGAGCACGAGT 632 Query 42943 TCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGT 43002 || | | | || || |||||| ||| ||||||||||| | ||||||||| | | Sbjct 631 TCGTGAGTGATTCCCTCCCCGTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAAT 572 Query 43003 ACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCC----TCTAC 43058 ||||| ||| ||| ||||||| || ||| | | ||||| || || ||||| Sbjct 571 ACATCGAGTTCGTGGCCGACCGCCTGTTGTACTCGCTGGGT----GCGTCCAAGATCTAC 516 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 ||| | | ||| ||||||| ||||| | |||||| | |||||||||||||||| Sbjct 515 AACGTGAAGAACCCGTTCGACTGGATGGACATGATCTCGCTACAGGGCAAGACCAACTTC 456 Query 43119 TTCGAGAAGCGCGTCGCCGACTAC 43142 || ||||||||||| | ||| ||| Sbjct 455 TTTGAGAAGCGCGTGGGCGAGTAC 432 >seq369 Length=26862 Score = 351 bits (388), Expect = 2e-91 Identities = 1384/2129 (65%), Gaps = 100/2129 (5%) Strand=Plus/Plus Query 243775 CAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAG 243834 || |||||||||||| |||||||| || | |||||||| || |||||||| ||||| Sbjct 4323 CATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAA 4382 Query 243835 CTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTG 243894 ||| | ||| | |||||| ||| | | | ||| | ||||||||||| Sbjct 4383 CTTACTGATCGTC------GGGTCG-----GCAATGTGA-ATGTTCAACGACTGGCTCTG 4430 Query 243895 GTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCAT 243953 | | | ||| |||| || || || | || | | | | ||||||| || || Sbjct 4431 GCAAATGTAGG-CGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATTTCCC 4489 Query 243954 ACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGC 244013 || | |||||||| | ||||| || || || | || | |||||||| |||| Sbjct 4490 ACACTGTCTTGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGC 4549 Query 244014 CCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC---CA 244070 | || | | || |||| |||||| | | |||| | |||| |||| || Sbjct 4550 CACCGTCAGCCAGGATCTGGTTGCGCACCTCAGGCGTCCAGATTCCCA---GCTCGATCA 4606 Query 244071 GCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGT 244130 || | | | |||| | ||||||| | | ||||| || | |||||||||||| | || Sbjct 4607 GCTCTTTCATGAGGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGT 4666 Query 244131 AGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCG 244190 | | ||| | |||||||||| ||| ||||||||| ||||| ||||| || Sbjct 4667 ACATGTTCGACGTATACGGCTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACG 4726 Query 244191 CAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGT 244249 |||| ||||| || | ||| || || ||| | | ||||||| | ||| || | Sbjct 4727 CAGTGGGCATCGGAGCCACGAGGAGCGAGTTGCGTATGCCGTGCTT---GATCACGTTCT 4783 Query 244250 C--TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGT 244307 | ||||| | |||||||||||| || || || || | | | ||||||||||| Sbjct 4784 CCTTGAGCGCAGTCCAGTCCCACAAACCGGA-AGA----CGGGGTC-ACGCCCCACATGT 4837 Query 244308 CAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTA-GGGACCGTCG 244366 | ||||| | | ||||||||| | || ||||| | | ||| ||| ||| || | Sbjct 4838 CGAACTGGAAGATACCCTTGCTGGCAGGCGAGCCCTGGAACGTCTCGTACGGGCCCAGCT 4897 Query 244367 CGCTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCAT 244425 | || ||| | || || | | || | | ||||||||||| ||||||||||| | Sbjct 4898 C-CTTGGCGATCTC-CATCGACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTT 4955 Query 244426 CTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGAT-GCCCATCATCATGAAGACGT 244484 | |||| | || ||||| |||| | | | | || | ||| | || || | | Sbjct 4956 CATGTTGAGTTCACGGGC-TTGCGGGCTCTCGAACGCATAGTTCATGAGGATAAATGCAT 5014 Query 244485 CGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCT 244543 | || || ||||| || || || || | || | ||| ||| ||||||| || || || Sbjct 5015 CCGCGAGACCCTGGACACCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGTGCCT 5074 Query 244544 TCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGG 244603 | | |||||||| ||||| | || || ||||| || | ||| ||||| | || | Sbjct 5075 CCTCG-ACGGGGTAGTAGTTGACATCAATGACCTTATTCAAGTTCCGGGTCACCACCTTG 5133 Query 244604 ACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC 244663 || ||| |||| ||| ||| | || | ||| |||||| Sbjct 5134 GTCACCTCGTACAGCTTCTGGTAGTTGAACAC-------TCC------------ATCCTC 5174 Query 244664 -ACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT 244722 ||||||| | |||||| || ||||||||||| || |||||||| || | || Sbjct 5175 CACAAACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGT 5234 Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 ||||| | ||||||| ||| | ||| || | ||| ||||| |||| ||| || || Sbjct 5235 GTACTCCATAATCTCGCAGCACAAGTTGCTTGAGCGGATCGTGCCGAGGTTCTGCTGGTT 5294 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842 |||||| |||| ||||||||||| |||||||| ||| | || ||||| | ||| || Sbjct 5295 CGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCTGTCTCAATCTGCGC 5354 Query 244843 GACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC 244902 | | |||| | | ||| || | | || |||| |||| |||| || ||||| Sbjct 5355 GTCCAGGATGGCGAACCACAGCTGCTGGGCGTTGATCGTCTTGCGCGCGCGTCCCTCCTT 5414 Query 244903 CTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGG-- 244960 |||||| |||||| | |||||||||| ||||||| ||||| || |||||| Sbjct 5415 CTCGTACTTCTCGTACAGCGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGC 5474 Query 244961 CACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGG 245020 | || | ||||| | || ||||||| ||| ||| || | || |||||| || Sbjct 5475 CTCGTTG--GGGCAGAACAGGCTCCACTTGCCATTCGCCTCCACGCGCTTCATGAACAGA 5532 Query 245021 TCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TT 245079 ||||||| ||| || || | || | ||| | | | ||| | || | ||| || Sbjct 5533 TCGGGGACCCACAGAGCGTAAAACAAGTCGCGCGCGCGGTGC-AGCTCGTTACCGTGATT 5591 Query 245080 CTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAG 245139 ||| | |||||||| || || || |||||| ||||||| ||||||| ||||| |||| Sbjct 5592 CTTACGCAGCTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAA 5651 Query 245140 GGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGA 245195 | || |||||| || |||||||||| | | ||||| ||||||||| Sbjct 5652 CGATCCTTTGCGCTTGCCTCCGCCCTGGTCCA----CATAGCGAGCCGTGTCGTTGAAGA 5707 Query 245196 TGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCT 245255 | ||| | || | || ||||| || ||||| ||||| ||||||| | | Sbjct 5708 CCCTCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCG 5767 Query 245256 TGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGC 245315 || | | || |||| || ||||| | || ||||| |||||||||| |||| Sbjct 5768 TGGCGCGGATGTTGTGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGC 5827 Query 245316 AGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGC 245375 | ||||| ||||| |||||||| || ||| || |||| ||||| |||| Sbjct 5828 ACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAGC 5887 Query 245376 AGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAA 245435 | || |||||||| || || ||| | ||| || || ||||| | ||||| |||| Sbjct 5888 ACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAA 5947 Query 245436 AGTAGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGG 245494 || | | || || | || | ||||||| || || || | ||||| | |||| Sbjct 5948 AG-AACATCTGTGACATGAGCTCGTACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGG 6006 Query 245495 ATCTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT-CGGGTC 245552 || ||| || ||| | ||||| | |||||||| ||| | | || | | | || Sbjct 6007 ATACCCAGCGC-CACGCGCATGATCATCTGCTGGGGGCGCTCCA--CGACCTTGCCGTTC 6063 Query 245553 -CCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 | || | |||| ||||||||||| ||||| || ||||| ||| ||||||| Sbjct 6064 ACGCGGAAGAGGTAGCCCCGCTCGAGCGTTTTGAAGCCGAAGTAGTCGTACTCAAAGTCC 6123 Query 245612 GCGTGGTGCCTGACGGCTGCGTCGAGTCTC-TCGGCGTGCTTC-TGACTGACCTCGTAAA 245669 || ||| ||| ||| | || || ||| || ||||| | | || || | |||| | Sbjct 6124 CGGTCGTGGATGATGGCCGAGTTCAG-CTCGTCCTTGTGCTGCATCAC-GAGCGCGTACA 6181 Query 245670 ACTTTTGCGCTATGAGGGGAGCC-CTGAGCCCGGTGTC-CG-GATTGACGTTGAACCAGA 245726 | | || ||||| || ||| | | ||||| | || || | || ||| ||| Sbjct 6182 CGTCGTCGGCGATGAGCGGCGCCGCGGCGCCCGTTTTCTCGTGCGTGTTCTTGTGGAAGA 6241 Query 245727 GCCTC----TTGCACACCTCCGAGAACTTGGGGCTGGTGAGCTTATGCAGGTTGGTGACT 245782 |||| ||| ||| ||| ||| | | ||| ||| |||||||||| || Sbjct 6242 -CCTCGATGTTG-TCAC--TGAAGACCTT---GTTCGTGTTCTTGTGCAGGTTGGACACG 6294 Query 245783 GCTATGCGCGCCGCCAACTTGCTGTAGTCGGGGTGAGTGGTGGTCATGTTGGAGGCCGTG 245842 || ||||||||||||| |||| | |||| ||||| ||| || || | |||||| Sbjct 6295 GCGATGCGCGCCGCCAGCTTGGAGAAGTCTGGGTGCTGCGTGCTCTGGTACGCGGCCGTC 6354 Query 245843 TGGGCCAGCAGCTCGTCAATCTCGGACGT 245871 | ||| ||||||||| | ||||||||| Sbjct 6355 TCGGCGGCCAGCTCGTCCAGCTCGGACGT 6383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944273792706160