Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq382 109 5e-19 >seq382 Length=26401 Score = 109 bits (120), Expect = 5e-19 Identities = 366/561 (65%), Gaps = 29/561 (5%) Strand=Plus/Plus Query 20276 TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGA 20335 ||||| ||||||||||| || || || | ||||| || |||| | ||| |||| |||| Sbjct 6215 TAGCTTGCAATGTTAAACGGCACACCAAGGCCCATATCGGCCGAGCGCTGGTACATCTGA 6274 Query 20336 CAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCC 20395 || || | || ||||| || || || || || || |||| |||||| ||||| || ||| Sbjct 6275 CACGACAATTCGCCGTCCGCCACGTAGAACTGGCAGAACATGTGACACGGCGGCAGTGCC 6334 Query 20396 ATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTA 20455 ||| || || || |||||||||||| ||| | ||| | | || ||| || Sbjct 6335 ATCTCATTCAGATCAGCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCATCGGGTTC 6394 Query 20456 TTTTTTA--TTA--AATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTC 20511 | | ||| |||| | ||| | ||||| | ||||| || || || || Sbjct 6395 GTACGCAGCTTATGAATCACCTCAGTA----AGCTGGTCCACTCCCTGTCCAGTGTAATC 6450 Query 20512 AGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCC 20571 || | | |||| |||| || ||||| || | ||||||||| ||||| || ||||| Sbjct 6451 TGCGTGCATGTCCGTGTACTTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACCGGTCC 6510 Query 20572 CAAATCCCCCTCCCTTCTGTGCG---CCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCC 20628 | ||| || |||| | ||| || || || | |||| |||||| ||| || Sbjct 6511 GAGATCACC--TACTTC-GCGCGTCTGCAATCCTCGGCTATCCAGATACTCCCGGGACCC 6567 Query 20629 ATTTTTGTCCCATATCTTGA-CTCCTGTTCTTGAA-----AGCTCCCTGGAGTCAGTACT 20682 ||| |||||| || | | |||| | || | || | || | ||| Sbjct 6568 ATTCCCGTCCCAGATGTGAATGTCCTTCTGCTGCAGCGTGTGCGCGCTCGTGTC------ 6621 Query 20683 CCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGT 20742 || | | |||||| |||||||| | | | ||||| ||||| ||||| ||||| || || Sbjct 6622 GCCGCTGATAAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGT 6681 Query 20743 TAGTA-AGGGA--AAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAG 20799 || | |||| | || || | |||||| | || |||| ||||| | || | Sbjct 6682 GAGCAGCGGGAACACGTTTTCTCTCAGACTGAAGCTCATCTGCGCTCCAAACACCGACAA 6741 Query 20800 GGTGCCTATGCCGGTGCGGTC 20820 ||||| |||| |||||||| Sbjct 6742 CGTGCCAGTGCCCGTGCGGTC 6762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441342229416440