Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq41 93.3 3e-14 seq138 87.8 1e-12 >seq41 Length=66094 Score = 93.3 bits (102), Expect = 3e-14 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||||||||| || |||||||| |||||||| |||||||| || | Sbjct 28270 ACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTTTCCTTCTGGATGTTGTAGTCCGA 28211 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || |||| |||| ||||||||||| || ||||| |||||||| || Sbjct 28210 AAGAGTGCGGC-CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 28157 >seq138 Length=77892 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 12964 CCACCGCGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTC-GCT 13022 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || |||||||||||||| || ||| Sbjct 13023 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 13082 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || ||||| |||||| ||||| Sbjct 13083 GATGCCTTCCTTGTCTTGAATTTTCTGCTT 13112 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || ||||||||||| || ||||| ||||||||| |||||||| || || | || || Sbjct 12745 AGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCG 12803 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| || | |||||||| || || |||||||||||||| || ||| | || || Sbjct 12804 ACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTC 12863 Query 34029 TTTGTCCATAATTTTTTGCTT 34049 ||||| |||||| ||||| Sbjct 12864 CTTGTCTTGAATTTTCTGCTT 12884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397035586003882