Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq33 127 5e-24 seq138 118 3e-21 seq738 114 3e-20 seq97 84.2 5e-11 >seq33 Length=70540 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| || | || || || || | || || || ||||| || |||||| Sbjct 19135 TCCACCGCGAAGACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCT 19194 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||||| ||||| || | || || || |||||||||| |||||| || | || Sbjct 19195 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGG 19254 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||| || || ||||||||| |||||||| || || || || | || || Sbjct 19255 GATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCAC 19314 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| |||| ||||| || || |||||||| Sbjct 19315 GTCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 19362 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| ||||| || | || || || |||||| Sbjct 19400 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAG 19459 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| |||||| || | ||||| ||||| || || ||||||||| |||||||| Sbjct 19460 ATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTG 19519 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || | || || || ||||||||||||||||| |||| ||||| || Sbjct 19520 TCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACA 19579 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 19580 AAGATCTGCAT 19590 >seq138 Length=77892 Score = 118 bits (130), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || || || | ||| || || ||||| || |||| Sbjct 12960 CATG-CCACCGCGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGT 13018 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||| ||||| ||||| || | Sbjct 13019 CGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAG 13078 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || || || |||||| ||||| || || || || || || | Sbjct 13079 GCGGGATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCT 13138 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || | ||||||||||| || |||| |||||| ||||| |||||||| Sbjct 13139 CCACGTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 13190 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| ||||| || | || || || ||||| Sbjct 12772 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAA 12831 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || | ||||| ||||| || || || |||||| ||||| || Sbjct 12832 ATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTG 12891 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || || || || | ||||||||||| || |||| |||||| ||| Sbjct 12892 TCGATCGAGTCCGACGGCTCCACGTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACG 12951 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 12952 AAGATCTGCAT 12962 >seq738 Length=22000 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 12299 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 12240 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || | ||||| ||||| || |||||||||||| || || || || Sbjct 12239 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 12180 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| | || || || |||||||| ||||| || ||||| ||||| || || Sbjct 12179 ATGCTGTCGGATGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAAAG 12120 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 12119 ATCTGCATGAT 12109 >seq97 Length=51161 Score = 84.2 bits (92), Expect = 5e-11 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 325334 CTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAG 325393 || ||| |||||| || ||||||| | | ||||||||| || || |||| || Sbjct 38696 CTAGCGGCATCCTTGCCCCCCTGCAGACGGGTACCGAACTGACCTGAAGGGTACAAT-AG 38638 Query 325394 TTGATG-TTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA 325452 | || | || ||| ||| || | ||||| || | ||| || || ||| ||||| || Sbjct 38637 TGGAAGGTTGTTGGATCCCACGAAGTCCTGCGCCATGTTGACAATCGTCGAGTGCAGCGA 38578 Query 325453 TGCTTCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAACCGCTGAACTGTGCAACC 325510 |||||||||||||| || || |||||| ||||| ||| || | |||||| ||| Sbjct 38577 AGCTTCGCCATGGTGGTAAGCCGTATGCTCACTGCA--GTAGCCCGCCAGCTGTGCCACC 38520 Query 325511 TTCACGTCGGTCGTCAAATTGCGCTT 325536 || || ||| |||| | |||||||| Sbjct 38519 TTAACCTCGCTCGTTAGCTTGCGCTT 38494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179570651541798