Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq369 251 9e-62 seq391 150 2e-31 seq97 96.9 4e-15 >seq369 Length=26862 Score = 251 bits (278), Expect = 9e-62 Identities = 1119/1749 (64%), Gaps = 66/1749 (4%) Strand=Plus/Plus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| |||||||||||||||| ||||||||| || | ||||| || | |||||| Sbjct 4326 GTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAACTT 4385 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 || || || | ||| | ||||| ||| || ||| || || Sbjct 4386 ACTGATCGTCGGGTCGGCAATGTGAATGTTCAACGACTGGCTCTGGCAAATGTAGGCGCC 4445 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 ||| ||||||| || || | ||| ||||| ||||||||||||||| || |||| Sbjct 4446 ACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATTTCCCACACTGTCTTGTACTT 4505 Query 113782 GTTCTTAATATCATCTGGGATA---TCCACGATATTTTGGATGGAGCCACCCGCCTTGAC 113838 | ||| | | || || || | ||| || || | ||||||||| | | Sbjct 4506 CTCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAG---C 4559 Query 113839 CATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG 113895 || || | || || || | ||||| || | || | || || | || ||| Sbjct 4560 CAGGATCTGGTTGCGCACCTCAGGCGTCCAGATTCCCAGCTCGATCAGCTCTTTCATGAG 4619 Query 113896 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 113955 | ||| || || | |||||||| || || ||| | || || || | ||| Sbjct 4620 GTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGT 4679 Query 113956 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGG 114015 || ||||| | | |||| ||||| ||||| || || || || || || |||||||| || Sbjct 4680 ATACGGCTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGG 4739 Query 114016 TGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCA 114075 |||| ||| || ||| || | || | | | | | |||||||| || ||| Sbjct 4740 AGCCACGAGGAGCGAGTTGCGTATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGTCCA 4799 Query 114076 GTCGTA-------GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 114128 ||| | | || | ||| | ||| ||||| || ||||||| |||||| | Sbjct 4800 GTCCCACAAACCGGAAGA-CGGGGTCACGCCC---CACATGTCGAACTGGAAGATACCCT 4855 Query 114129 GGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGC 114188 | ||| ||||| |||| || |||||||| |||||| ||| || | || Sbjct 4856 TGCTGGCAGGCGAGCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTCCATCG 4915 Query 114189 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT--TGCCTT--- 114243 || ||| | | |||| || || ||||| || ||| ||||| || || Sbjct 4916 ACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATG------TTCATGTTGAGTTCAC 4969 Query 114244 GGCCTCGTCGGAA-TCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTG 114300 || || | || || ||||| ||| || | |||||| ||||||||||||| || Sbjct 4970 GGGCTTGCGGGCTCTCGAACGCATAGTT--CATGAGGATAAATGCATCCGCGAGACCCTG 5027 Query 114301 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATA 114360 |||||| | |||| ||||| || | ||| || ||||| || || ||| ||||| || Sbjct 5028 GACACCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGTGCCTCCTCGACGGGGTA 5087 Query 114361 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 114420 | || ||| || ||| |||| | || ||| || ||||| || | || | || Sbjct 5088 GTAGTTGACATCAATGACCTTATTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAG 5147 Query 114421 CTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 114480 ||| | ||| | || | || | || | ||| |||| || ||||| | ||||| Sbjct 5148 CTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACAAACTTGGGGAGGGCCACAGACGC 5201 Query 114481 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 114540 ||| || ||||| | |||||| |||||||| ||||| || ||||| || Sbjct 5202 CAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAGTT 5261 Query 114541 ---TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597 ||| | || ||||| | ||||| || || ||||| ||| ||| ||||| Sbjct 5262 GCTTGAGCGG---ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTT 5318 Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATC 114657 ||| |||||| | ||| || ||||| | || | | || || || ||| || | Sbjct 5319 GTACAGCATGAACGGCACGCCTGTCTCAATCTGCGCGTCCAGGATGGCGAACCA--CAGC 5376 Query 114658 GGCGGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 114713 || | ||| | | | ||| || || ||||||| ||||||||| ||| || | Sbjct 5377 TGCTG--GGCGTTGATCGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTCTCGTACAGCG 5434 Query 114714 CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAG 114773 || ||||| || ||| | ||| |||| || || |||| | |||||||| || Sbjct 5435 TCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCGTTGGGGCAGAACAGGC 5494 Query 114774 ACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGA 114833 ||| | ||| | |||| || ||||||||||| || || |||| ||| ||||| | | Sbjct 5495 TCCACTTGCCATTCGCCTCCACGCGCTTCATGAACAGATCGGGGACCCACAGAGCGTAAA 5554 Query 114834 AGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 114892 | | || || || | || | || | || ||||| ||||| ||||| || || Sbjct 5555 ACAAGTCGCGCGCGCGGTGCAGC-TCGTTACCGTGATTCTTACGCAGCTCCAGGAACTCG 5613 Query 114893 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCA 114949 | | || ||||||||||| |||||||| | |||| || || || || | || Sbjct 5614 AACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGATCCTTTGCGCTTGCCTCCG 5673 Query 114950 GCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCA 115009 |||||| ||||| | || ||| | || || || | ||||| || ||||| || | Sbjct 5674 CCCTGGTCCACATAGCGAGCCGTGTCGTTGAAGACCCTCAGCATGGGGATGATCCCGTTG 5733 Query 115010 GATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATA 115069 ||| || || || || || || || |||| | || | || || || Sbjct 5734 GATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTAATG 5793 Query 115070 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCG 115129 |||||||| || |||||||| ||||| |||||||| | |||| || |||| || || Sbjct 5794 CCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCC 5853 Query 115130 TCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 115189 || |||||||| ||| | || | |||||||| ||||| || || | || || Sbjct 5854 TCAATCGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGTG 5913 Query 115190 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTA 115248 || ||||| ||||| || || |||||||| | || | || | || ||||| ||||| Sbjct 5914 CCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGCTCGTA 5972 Query 115249 GGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 115308 || | || | || | ||||||| | ||| ||||| | || || ||||| | ||| Sbjct 5973 CGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGGATACCCAGCGCCACGCGCATGATCAT 6032 Query 115309 GTATTGGGG 115317 | ||||| Sbjct 6033 CTGCTGGGG 6041 >seq391 Length=25901 Score = 150 bits (166), Expect = 2e-31 Identities = 361/539 (67%), Gaps = 13/539 (2%) Strand=Plus/Plus Query 125748 CCAGC-TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||| ||| ||| || || || |||||||| |||||||| ||||| || | | | Sbjct 421 CCAGCCTTGGAGTACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGTAGCGAG 480 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 125866 || | ||||| | || || |||||||| ||| | || | | | | || | | Sbjct 481 ATCATGTCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACGCACCCAGCGAG 540 Query 125867 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 125926 | | || || || | ||| |||| ||||| | |||| | |||||||||| ||| Sbjct 541 TACAACAGGCGGTCGGCCACGAACTCGATGTATTGGCACATGAGCGCAGAGTTCATGCCG 600 Query 125927 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGC 125986 || || | ||||| | || | |||| | | |||||| |||| || || ||| Sbjct 601 ATCAGCTCCACGGGGAGGGAATCACTCACGAACTCGTGCTCAATCACCACAGCGTCACGC 660 Query 125987 ACGATGGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCA 126044 ||||| ||||| | | | | || ||| | | || ||| || | | | | || Sbjct 661 ACGATCGCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAACTTCGAGTACATGAGGCA 719 Query 126045 CGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 || | || || ||| | |||||||| ||| |||||| || |||||||||| ||| | Sbjct 720 CG-CGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGAC 778 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | |||||||| || ||||| || | |||||| || | || || || ||||||||||| | Sbjct 779 CAGGCATGAGGCCGCGCTTTTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAA 838 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA----GCGCGACTTTGTG 126220 | |||||||| |||||||| | || ||||| | |||| ||||| | | Sbjct 839 TGCCCTCCACGGCAGCGAACGCCAGCAGGCGCTCCGGGTAGGACGACACGCGA----GGG 894 Query 126221 TCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||| ||||||| | |||||| | ||||| ||||| | ||||||| |||| ||| || Sbjct 895 TCACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 953 >seq97 Length=51161 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 172763 AGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCG 172822 || ||| |||| | ||||| || ||||| | || || ||||| || ||||||||| Sbjct 37790 AGCTGCACCACAGTCGCATCACGCACATTCAGAAGTTTGCCGCGGAGGGGAAACACACCG 37731 Query 172823 TAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 172882 ||||||||||| |||||||| | |||||||| || || || | ||| || |||||||| Sbjct 37730 TAGTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCT 37671 Query 172883 TCCGTCACGATGAGCG 172898 || |||| || |||| Sbjct 37670 TCAGTCAAAATTAGCG 37655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597312225796280