Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq738 116 4e-21 seq33 105 7e-18 seq138 100 3e-16 >seq738 Length=22000 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || |||| || |||||||| |||||||| | Sbjct 12301 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 12242 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | || ||||||||| |||||| || |||| | | | Sbjct 12241 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 12183 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | ||||| | ||||| || | ||||||||| || ||||| || ||||| ||| Sbjct 12182 TCAATGCTGTCGGATGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACA 12123 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 12122 AAGATCTGCAT 12112 >seq33 Length=70540 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 19147 ACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 19206 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || | ||||||||||| | || | || ||||| Sbjct 19207 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTT 19266 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| |||||| || || | ||| | | | || ||| | ||||| || | ||||| Sbjct 19267 GTCTTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGA 19325 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || ||||| | |||||| |||||||| ||||| Sbjct 19326 TCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 19362 Score = 105 bits (116), Expect = 7e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| || |||||| || || ||||| || ||| || || || Sbjct 19376 CGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 19435 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || | ||||||||||| | || | || |||||| Sbjct 19436 TCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTG 19495 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || |||||| || || | ||| | | | || ||| | ||||| || | |||||| Sbjct 19496 TCTTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGAT 19554 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || || ||||| | |||||| |||||||| ||||| ||| Sbjct 19555 CGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCATGTTC 19594 >seq138 Length=77892 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | || ||||| ||||| || | || |||||| || || ||||| || Sbjct 12735 ACCGCCACGTAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCT 12794 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || || |||| || |||||||| |||||||| || || ||||||||||| | || Sbjct 12795 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 12854 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||| ||||| || || | | | | || ||| || ||||| Sbjct 12855 GATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCAC 12914 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || |||||||| | ||||| || ||||| ||||| Sbjct 12915 GTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 12962 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| || | || |||||| || || ||||| || ||| || || | Sbjct 12975 ACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 13034 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 13035 GTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 13094 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||||| || || | | | | || ||| || ||||| || | ||||| Sbjct 13095 GTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAAGTGAT 13154 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || |||||||| | ||||| || ||||| ||||| || Sbjct 13155 CGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 13193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543175175723440