Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq805 118 5e-22 >seq805 Length=27256 Score = 118 bits (130), Expect = 5e-22 Identities = 380/587 (65%), Gaps = 12/587 (2%) Strand=Plus/Minus Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || || ||||||||||| || |||||| || || ||| |||||||| || | Sbjct 5591 CGAGTGGTGGAGATCTATGGCCCTGAGAGCTCTGGCAAGACAACGTTGGCACTGAGCTGC 5532 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 66089 | || | || |||||| ||| ||| | |||| |||||| || || || | Sbjct 5531 ATTGCGGAGGCTCAGAAGACCGAGGGCGGGGTGTGTGCCTTCATCGATGCTGAGCACGCC 5472 Query 66090 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 66149 | || | | |||||| ||| || || || || | ||| || || |||| Sbjct 5471 ATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTGTACGTCTCGCAG 5412 Query 66150 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 66209 || ||| | ||||| | || ||||| |||| ||| ||| || ||||| | ||| Sbjct 5411 CCGGACTCGGGCGAAGAAGCGCTGGAAATCGCGGACACGCTCATCCGATCTGGAGCGGTG 5352 Query 66210 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 66269 | || | || ||||| ||||||||| || ||||| || || ||||| || || || Sbjct 5351 GACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTGCCACGTGCCGAGCTTGAGGGTGAA 5292 Query 66270 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 66329 || || ||| ||| | | ||||| || || |||||| || || |||||||||| Sbjct 5291 ATGGGAGACCAGCAGATTGCGCTGCAGGCGCGACTGATGAGCCAAGCTCTGCGCAAGCTC 5232 Query 66330 ACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAG 66389 || || || | ||| ||||| || | | |||| ||| | ||| ||||| Sbjct 5231 ACGGGGTCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAGATCCGCCAGAAG 5172 Query 66390 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 66449 | |||| | || ||| | |||| ||| | ||||||| || |||| | Sbjct 5171 GTGGGCATTAT---CTTCGGATCTCCTGAGGTCACGTCGGGTGGTACAGCGTTGCGTTAT 5115 Query 66450 TACGCCTCGGTGCGTATGGATGT---CCGCAGGATCGCCACCGAGAAGGAAGGCGATGAG 66506 ||||| || ||||| | || | ||||| || || | | |||||||| || || Sbjct 5114 TACGCGTCTGTGCGCCTTGACATTCGCCGCAAGACGGCTATC---AAGGAAGGTGACCAG 5058 Query 66507 GCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 66553 |||||||||| ||| ||||||||| | ||||||||||||||| Sbjct 5057 ATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAGAACAAGCTGGC 5011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242454025746572