Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq369 311 9e-80 >seq369 Length=26862 Score = 311 bits (344), Expect = 9e-80 Identities = 1201/1872 (64%), Gaps = 57/1872 (3%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||| ||||| | ||||||||| || ||| | |||||| || || | |||| | Sbjct 6113 TACGACTACTTCGGCTTCAAAACGCTCGAGCGGGGCTACCTCTTCCGCGTGAACGGCAAG 6054 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||| || || ||| || | |||||||| || | || || ||| || ||| Sbjct 6053 GTCGTGGAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGTATCCACAAGCAAGAC 5994 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGA-CATGCGGGACAAGAGGTATACCATGGCCAC 93896 || | | | ||| | | | ||| |||| | | | | ||| || || Sbjct 5993 ATCCAGGCGGCACTGCACACGTAC-GAGCTCATGTCACAGATGTTCTTTACGCACGCGAC 5935 Query 93897 CCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGAC 93956 || || || || ||||| || || ||| || ||| |||| ||||| |||||| || | Sbjct 5934 GCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTGGC 5875 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | ||| |||||| || || |||| ||||| |||||| | || ||| |||||| Sbjct 5874 CATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGCATCTC 5815 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACAT 94076 || | || || || || || || ||| | ||| || | || |||| | |||||| Sbjct 5814 CAAGTGGGCCGGAGGTATTGGCATTAGTATGCACAACATCCGCGCCACGAACAGCTACAT 5755 Query 94077 CCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGC 94136 |||||| || || || | |||||||| || |||| ||||| ||||||||||| || | Sbjct 5754 CCGCGGCACGAACGGATCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAACGACAC 5695 Query 94137 GGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGA 94196 ||| ||||| ||||||||||| || || | | | || || || ||||| |||| || || Sbjct 5694 GGCTCGCTATGTGGACCAGGGCGGAGGCAAGCGCAAAGGATCGTTCGCCATCTACCTGGA 5635 Query 94197 GCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCT 94256 ||| |||||||| |||||| | ||| | || ||||| ||||| ||||| ||||| || Sbjct 5634 GCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGTAAGAATCACGGTAACGAGCT 5575 Query 94257 GGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGT 94316 | | | || | ||| | || |||||||| ||||| || || || || ||||| ||||| Sbjct 5574 GCACCGCGCGCGCGACTTGTTTTACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGCGT 5515 Query 94317 CGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGT 94376 ||| || | ||||| || || || ||||| || |||||||| | ||| Sbjct 5514 GGAGGCGAATGGCAAGTGGAGCCTGTTCTGCCCCAACGAGGCCCCCGGACTCTACGA--G 5457 Query 94377 TTGTGGATCG-CGTTTTGAAGAC-TTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGG 94434 | ||| || || || |||| |||| | ||||| | |||| || | Sbjct 5456 TGCTGGGGCGACGAGTTCGAGACGCTGTACGAGAAGTACGAGAAGGAGGGACGCGCGCGC 5397 Query 94435 AAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGT 94494 ||| || | || | |||||||| ||| |||||| ||| | ||||| || Sbjct 5396 AAGACGATCAACGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATTGAGACAGGC 5337 Query 94495 ACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGG 94554 ||| | ||| ||| ||||||| | | |||| |||||| ||||||||| ||||||| Sbjct 5336 GTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTCGGC 5277 Query 94555 GTGATCAAGAGCTC---GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 |||| |||| || ||||| ||||||| | ||||| || || || || ||| Sbjct 5276 ACGATC---CGCTCAAGCAACTTGTGCTGCGAGATTATGGAGTACACGTCGCCCGATGAG 5220 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671 | || ||||| ||||||| || | ||| ||| || ||| |||| | Sbjct 5219 GTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGAGGATG--GAGTGT 5162 Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT---CTTG 94728 || ||| | | ||| | ||| |||| | |||| |||| | | Sbjct 5161 TCAACTAC----CAGAAGCTGTACGAG---GTGACC--------AAGG-TGGTGACCCGG 5118 Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 ||| |||| | ||| || || |||| |||||||||| |||||| || || ||| Sbjct 5117 AACTTGAATAAGGTCATTGATGTCAACTACTACCCCGTCGAGGAGGCACGCAAGTCCAAC 5058 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 || || || || | || || || ||||||||| ||||||| || | | | ||| Sbjct 5057 ATGCGCCACCGCCCGGTTGGTATTGGTGTCCAGGGTCTCGCGGATGCATTTATCCTCATG 4998 Query 94849 -CGTCTGCCCTACGACTCTGTCGACGC-GGCGGGT---TTGAATTTGAACATATTCGAAA 94903 | || | | ||| | ||| || || | || ||||||| ||||| | Sbjct 4997 AACTATG-CGTTCGA----GAGCCCGCAAGCCCGTGAACTCAACATGAACATCTTCGAGA 4943 Query 94904 GCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCAC 94963 || || |||| | ||| | || | | | |||| ||| || || Sbjct 4942 CGATCTACTACGCTTCTATGGAGACGTCGATGGAGATCGCCA---AGGAGCTGGGCCCGT 4886 Query 94964 ACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCTGGGGT 95022 |||| |||||| || ||| ||| | | |||| || || ||||||||| | ||||| Sbjct 4885 ACGAGACGTTCCAGGGCTCG-CCTGCCAGCAAGGGTATCTTCCAGTTCGACATGTGGGGC 4827 Query 95023 GTGA---AGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACAC 95079 |||| | | || ||| ||| |||||| || || | | || ||||| ||| Sbjct 4826 GTGACCCCGTCTTCCGGTTTGTGGGACTGGACTGCGCTCAAGGAGAACGTGATCAAGCAC 4767 Query 95080 GGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTT 95139 || | ||| |||| || ||||| || |||||||| || || ||||| ||||| | Sbjct 4766 GGCATACGCAACTCGCTCCTCGTGGCTCCGATGCCCACTGCGTCGACGGCTCAGATTTTG 4707 Query 95140 GGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCC 95199 |||||||||||||| |||| || | || || ||| |||||||| | || ||||| || Sbjct 4706 GGCAACAACGAGTCCATCGAGCCGTATACGTCGAACATGTACAACCGCCGCGTGCTGGCT 4647 Query 95200 GGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGG 95259 || || ||| | || | |||||| ||||| | || |||| ||||| | ||| Sbjct 4646 GGTGAGTTCACGATCGTGAACAAGTACCTCATGAAAGAGCTGATCGAGCTGGGAATCTGG 4587 Query 95260 GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAA 95319 |||| ||||| | || | | |||||||| ||||| | | || Sbjct 4586 ACGCCTGAGGTGCGCAACCAGATCCTGGCTGACGGTGGCTCCGTGCAGAAGGT---GAAA 4530 Query 95320 ---ATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTG 95376 || ||||| | |||||| | |||||||| |||||||| ||| |||| | Sbjct 4529 TCCATTCCGGACCAGGTCAAGGAGAAGTACAAGACAGTGTGGGAAATCAAGCAGAAGGCC 4470 Query 95377 ATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNN 95436 | | |||| |||| | ||| || ||| ||| |||||||| Sbjct 4469 GTGTTGGACCTGTCGGCGGACCGTGGCGCCTACATTTGCCAGAGCCAGTCGTTGAACATT 4410 Query 95437 NNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAG 95496 || ||||| || | | | || | ||||||||| ||||||| |||| ||| Sbjct 4409 CACATTGCCGACCCGACGATCAGTAAGTTGACGTCCATGCACTTCTACGCCTGGAAGAAG 4350 Query 95497 GGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTC 95556 || |||||||| || ||||| || |||| | || || || ||| |||| |||||| Sbjct 4349 GGGCTCAAGACGGGCATGTACTACATGCGCGGACGTCCGAAAGCCGACGCCATCCAGTTC 4290 Query 95557 GCCCTAGAAAAG 95568 || | || ||| Sbjct 4289 ACCGTGGACAAG 4278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494688934234360