Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq184 96.9 3e-15 seq380 93.3 3e-14 seq280 82.4 6e-11 >seq184 Length=39191 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 108474 CGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAG 108533 ||| ||| | || |||||||||||||| |||||||| |||||||| |||||| | | | Sbjct 16704 CGACCACCGCGTGCACCACAAGTACTCAGACACGACCGCCGACCCGCACAACTCGGGCCG 16763 Query 108534 GGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGATCTC 108593 || |||| ||| ||||| |||| |||||| || | | ||||||||| | ||| || Sbjct 16764 CGGCTTCTTCTTCGCGCACATGGGCTGGCTCCTGGTCAAGAAGGACCCCAAGGTGGTCAA 16823 Query 108594 GGCCGG 108599 |||||| Sbjct 16824 GGCCGG 16829 >seq380 Length=35671 Score = 93.3 bits (102), Expect = 3e-14 Identities = 179/264 (68%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 108336 CGTAGCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAA 108395 ||| ||||| | || | ||||| |||| || || | ||| | ||| | |||||| Sbjct 24683 CGTGGCCGGCCTGGGCATCACGGCGGGCGCGCACCGCCTCTGGTCGCACCGCGGCTACAA 24624 Query 108396 GGCCACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACAC 108455 ||||| ||| | | |||||||| ||| ||| |||| |||| || || Sbjct 24623 GGCCAAGCTGCCGCTGCGCGTGTTCCTCATGCTGTGCAACTCGATGGCCTTCGAGGGGAC 24564 Query 108456 CATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGA 108515 ||| | ||| || ||| ||| | || ||||||||| ||| |||||||||||||| Sbjct 24563 TATCTTCGACTGGTCGCGCGACCACCGCGTGCACCACAAGGGCTCGGACACGACGGCCGA 24504 Query 108516 CCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAA 108575 ||| |||||| | | | || ||| ||||||||| |||| ||| ||||| || ||| Sbjct 24503 CCCGCACAACTCGGAGCGCGGCCTCTTCTTCTCGCACATGGGCTGGATCATGGTGCGCAA 24444 Query 108576 GGACCCCGACGTGATCTCGGCCGG 108599 | || ||||| | ||||||| Sbjct 24443 GCACAAGAACGTGCGCGCGGCCGG 24420 >seq280 Length=37662 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/153 (73%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 118146 GCGCCGTAAAAGGCGATACACTCCGACAGTTTTCCGTCGCGACCGGCCCTTCCTATCTCT 118205 |||| ||| ||| ||| |||| |||| | || || || || ||||| | || ||| Sbjct 32863 GCGCTGTAGAAGATGATGCACTGCGACGGCTTGCCATCTCGCCCGGCGCGACCGGCCTCC 32804 Query 118206 TGATAATAACCGTCCAGTGATTTGGGCATACTGTGATGT--ATCACCAACCGCACGTCGG 118263 || || || || || | || |||| ||| | || || ||||| |||||||||||| Sbjct 32803 TGGTAGTAGCCTTCGATGGACTTGGC--TACCGAGAAGTGGATCACGTACCGCACGTCGG 32746 Query 118264 GTTTATCGATGCCCATCCCGAACGCTATCGTCG 118296 | || ||||||||||| ||| |||| ||||||| Sbjct 32745 GCTTGTCGATGCCCATGCCGTACGCGATCGTCG 32713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381747018524904