Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq369 181 1e-40 seq391 134 1e-26 seq33 116 4e-21 seq138 109 5e-19 seq738 96.9 3e-15 >seq369 Length=26862 Score = 181 bits (200), Expect = 1e-40 Identities = 624/961 (65%), Gaps = 19/961 (2%) Strand=Plus/Plus Query 153596 GGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATCT 153654 ||| | ||||||||| || || || ||| ||| |||| || || |||||| || |||| Sbjct 5190 GGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAATCT 5248 Query 153655 CGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGC 153714 || ||| | |||||| | || ||| | || ||||| || ||||| ||| Sbjct 5249 CGCAGCACAAGTTGCTTGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGG 5308 Query 153715 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA---A 153771 |||||| ||| | |||||| |||| |||| ||||| | |||| || | ||| | Sbjct 5309 CCGCGTCCTTGTACAGCATGAACGGCACGCCTGTCTCAATCTGCGCGTCCAGGATGGCGA 5368 Query 153772 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCT 153831 ||| ||| | ||| || | | || || ||| ||||| ||||||| || Sbjct 5369 ACCA---CAGCTGCTGGGCGTTGATCGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTCT 5425 Query 153832 CGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGAC 153891 ||||||| ||| ||||||||||| |||| ||| ||| ||||| || | || | Sbjct 5426 CGTACAGCGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCGTTGGGGC 5485 Query 153892 ACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGA 153951 | | ||| |||| | | | || | ||||| |||||||||||| || ||||| | Sbjct 5486 AGAACAGGCTCCACTTGCCATTCGCCTCCACGCGCTTCATGAACAGATCGGGGACCCACA 5545 Query 153952 GCGCGTACATGAGGTCGCGCGCCT--TGCAATCCTCCGCGCCCATGTTGCGTTT-CAGAT 154008 | ||||| | | ||||||||| |||| ||| | || || | | | ||| | Sbjct 5546 GAGCGTAAAACAAGTCGCGCGCGCGGTGCAG--CTC-GTTACCGTGATTCTTACGCAGCT 5602 Query 154009 TGAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTA 154067 || | | | | | | |||||||||||| || || | ||||| ||| | | ||||| Sbjct 5603 CCAGGAACTCGA-ACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGATCCTTTG 5661 Query 154068 CGCTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGT 154124 ||||| ||||||||| || || | ||| || | | ||||||||| | || |||||| Sbjct 5662 CGCTTGCCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTGAAGACCCTCAGCATGGGG 5721 Query 154125 TCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGA 154184 | ||| | | | ||||| || ||| | |||| |||||| | | Sbjct 5722 ATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTG 5781 Query 154185 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTC 154244 |||| ||| |||||| || ||| | |||| || ||| ||||| | ||||| Sbjct 5782 TGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTG 5841 Query 154245 CTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGC 154304 ||| ||||| || || ||||| | | | | |||| ||| ||||| ||| ||| Sbjct 5842 TCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGC 5901 Query 154305 GGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTC 154364 ||| |||| || || |||||| ||||| ||||||||||||| | | || | Sbjct 5902 GGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGAC 5961 Query 154365 ATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACG 154424 || | |||||| | | || | | ||| || | ||| || || ||||| ||| Sbjct 5962 ATGAGCTCGTACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGGATACCCAGCGCCACG 6021 Query 154425 CGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCA 154484 ||||||| ||| ||||| || || || |||| | || | ||||| || || Sbjct 6022 CGCATGATCATCTGCTGGGGGCGCTCCACGACCTTGCCGTTCACGCGGAAGAGGTAGCCC 6081 Query 154485 TTTTCGAGGGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCC 154544 ||||| |||||| | ||||| || | ||| ||||| || | || || ||||||| Sbjct 6082 CGCTCGAGCGTTTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATGGCC 6141 Query 154545 G 154545 | Sbjct 6142 G 6142 >seq391 Length=25901 Score = 134 bits (148), Expect = 1e-26 Identities = 494/755 (65%), Gaps = 23/755 (3%) Strand=Plus/Minus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 ||||||| | || |||||||||||| ||||||||||||| ||| ||| ||||||||| Sbjct 1174 ACGAGCGTCACTTCATCAAGCACGTGCTGGCGTTCTTCGCTGCCAGCGACGGCATCGTGA 1115 Query 52153 ACATTAACCTCATCGAGTACATGCAGCGGA-ACGTTCCGGAACTCGAGGCGCAATACTTT 52211 || ||||| ||| | | |||| | || | || | ||||| | | ||| Sbjct 1114 ACGAGAACCTGG-CGATGAACTTCAGCAATGAGGTGCAGGTGCCGGAGGCTCGCTGCTTC 1056 Query 52212 TATAATTTGCAAGT-GCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGA 52270 || || || | ||| |||||| | | ||| ||||| ||||| ||||| || || Sbjct 1055 TACGGCTTCCAGATCGCT-ATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGATCGA 997 Query 52271 GCAGCTG-ATAAAAGATGAGCACGAGCGCGA-CACGCTGCTGAATGCGTTCGAGCACG-T 52327 || | || || || | ||| || ||| |||||| ||| ||||| ||| | Sbjct 996 -CACATACATCAAGGACGCCGTGGAGAAGGATCAC-CTGCTGCGTGCCATCGAG-ACGAT 940 Query 52328 GCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACC-GCCA 52386 |||||||| || ||||| | ||||| | |||||| | || | | | | | Sbjct 939 CCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGT--GTGACCCTCGCGTGTCG 882 Query 52387 CGCTGGCCG-AGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || ||| ||||| || |||| ||||| || |||||| | || || || ||| | Sbjct 881 TCCTACCCGGAGCGCCTGCTGGCGTTCGCTGCCGTGGAGGGCATTTTCTTCTCGGGCTCC 822 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 || | ||||||| | | |||| | ||| | ||||| || |||| ||| ||| Sbjct 821 TTCTGCTCCATCTTCTGGCTCAAAAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAAC 762 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACG 52565 ||| | || || ||||| || ||||||||||||| ||||||||| ||| || | Sbjct 761 GAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCGAAG 702 Query 52566 CGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG---GAGGCGGTG 52622 |||| | || || |||| | | || | | || | || || ||| Sbjct 701 TTGGTGAAC---AAGCTGC---CGGAGAGCCGCGTGCACGCGATCGTGCGTGACGCTGTG 648 Query 52623 GCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCG 52682 | || || | ||||| | | | | || || || |||||| | ||||||||| | Sbjct 647 GTGATTGAGCACGAGTTCGTGAGTGATTCCCTCCCCGTGGAGCTGATCGGCATGAACTCT 588 Query 52683 CAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAG 52742 | ||||||| | ||||||||||| ||||| || || |||||| ||| || | Sbjct 587 GCGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTGTTGTACTCGCTGGGTGCG 528 Query 52743 CCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802 | ||| || ||||| || ||||| || | ||| ||| || ||||| ||||| Sbjct 527 TCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGATCTCGCTACAGGGC 468 Query 52803 AAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||| || |||||||| || |||||||| Sbjct 467 AAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTA 433 >seq33 Length=70540 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| |||| || | || | | | |||||||| || |||||||||||||| Sbjct 19363 GCCACCACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCT 19422 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || |||| |||| | |||||| ||||| ||||| Sbjct 19423 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGG 19482 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| || || | | || | | ||| | | |||||| Sbjct 19483 GATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCAC 19542 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || |||| || || ||||| ||||||||| Sbjct 19543 GTCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 19591 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || | || | | | |||||||| || ||||||||||||||| Sbjct 19136 CCACCGCGAAGACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19195 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| |||| | |||||| ||||| ||||| Sbjct 19196 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGG 19255 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| || || | | || | | ||| | | |||||| Sbjct 19256 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACG 19315 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || |||| || || ||||| ||||||||| Sbjct 19316 TCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 19363 >seq138 Length=77892 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||||| || | |||| |||||||||| || ||||||||||||||| Sbjct 12736 CCGCCACGTAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 12795 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || || | | || || ||||| ||||| || || Sbjct 12796 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 12855 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||||| || || | |||| || | | ||| | || |||||| Sbjct 12856 ATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTG-TCGATCGAGTCCGACGGCTCCAC 12914 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||| || || |||| ||| || || || ||||||||| Sbjct 12915 GTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 12963 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | |||| |||||||||| || |||||||||||||| Sbjct 12963 GCCACCGCGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCT 13022 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || || | | || || ||||| ||||| || || Sbjct 13023 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 13082 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||||| || || | |||| || | | ||| | || ||||| Sbjct 13083 GATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTG-TCGATCGAGTCCGACGGCTCCA 13141 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||| || || |||| ||| || || || |||||||| Sbjct 13142 CGTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 13190 >seq738 Length=22000 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||||||||| || || || | ||| Sbjct 12301 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 12242 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| ||||| || || || ||||| ||||| |||||| || || | |||| Sbjct 12241 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTG- 12183 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||||| | |||||| || | ||| | || || || ||||| || || ||| Sbjct 12182 TCAATGCTGTCGGATGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACA 12123 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 12122 AAGATCTGCATG 12111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496228027625520