Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq33 150 2e-31 seq138 134 1e-26 seq369 104 2e-17 seq738 98.7 9e-16 seq391 84.2 2e-11 >seq33 Length=70540 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | |||| ||||| || | |||||||| || || || ||||| |||| Sbjct 19135 TCCACCGCGAAGACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCT 19194 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || || ||| ||||||| |||||||| || ||||| Sbjct 19195 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGG 19254 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| |||||||| |||||||||||| | |||| |||| | ||||| | ||| | Sbjct 19255 GATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTG-TCGATCGAGTCCGAAGGCTCCA 19313 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | ||| || || |||| || || ||||| ||||||||| Sbjct 19314 CGTCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 19363 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | |||||||| || || || ||||| |||| | Sbjct 19364 CCACCACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19423 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || ||| ||||||| |||||||| || ||||| Sbjct 19424 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGG 19483 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| |||||||||||| | |||| |||| | ||||| | ||| || Sbjct 19484 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTG-TCGATCGAGTCCGAAGGCTCCAC 19542 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| || || |||| || || ||||| ||||||||| Sbjct 19543 GTCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 19591 >seq138 Length=77892 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| |||| ||| ||||| || || || ||||| |||| | Sbjct 12964 CCACCGCGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 13023 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || |||||| | |||| |||||||| || || || Sbjct 13024 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 13083 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| |||||||| ||||||||||| | | |||| | ||||| ||| || Sbjct 13084 ATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACG 13143 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||| |||| ||| || || || |||||||| Sbjct 13144 TCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 13190 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || |||| |||| ||||| |||| ||| ||||| || || || ||||| |||| | Sbjct 12736 CCGCCACGTAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 12795 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || |||||| | |||| |||||||| || || || Sbjct 12796 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 12855 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| |||||||| ||||||||||| | | |||| | ||||| ||| || Sbjct 12856 ATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACG 12915 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||| |||| ||| || || || ||||||||| Sbjct 12916 TCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 12963 >seq369 Length=26862 Score = 104 bits (114), Expect = 2e-17 Identities = 321/492 (65%), Gaps = 6/492 (1%) Strand=Plus/Plus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 ||| ||||||||||| | || | || ||| | ||||| ||||||||||| || Sbjct 4281 GTCCACGGTGAACTGGATGGCGTCGGCTTTCGGACGTCCGCGCATGTAGTACATGCCCGT 4340 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA--TGACCGAGTACGTGGGT 145836 ||||||| |||| ||| | ||| ||||| ||| || || | || || ||| || Sbjct 4341 CTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAACTTACTGAT--CGTCGGG 4398 Query 145837 TCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCC-CGGTCGGCGGC 145895 ||||| | | || | || |||||||| |||| | || ||| ||||| || | Sbjct 4399 TCGGCAATGTGAATGTTCAACGACTGGCTCTGGCAAATGTA-GGCGCCACGGTCCGCCGA 4457 Query 145896 CATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTG 145955 || ||| | || | ||| || |||||||| | || || | |||||||| || Sbjct 4458 CAGGTCCAACACGGCCTTCTGCTTGATTTCCCACACTGTCTTGTACTTCTCCTTGACCTG 4517 Query 145956 CTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAA 146015 | || || | | |||||||| || ||| || |||| || | |||||||| Sbjct 4518 GTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCAGCCAGGATCTGGTTGCGCAC 4577 Query 146016 TTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTG 146075 || || || | || || || | || | || ||||| |||| ||| || | | Sbjct 4578 CTCAGGCGTCCAGATTCCCAGCTCGATCAGCTCTTTCATGAGGTACTTGTTCACGATCGT 4637 Query 146076 AAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTC 146135 ||||| || || || ||||| | |||| ||| || ||||||||| ||||| Sbjct 4638 GAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTATACGGCTCGATGGACTC 4697 Query 146136 GTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTT 146195 |||||| || | ||||| ||||||| || || ||||| ||||| || | ||||| Sbjct 4698 GTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTT 4757 Query 146196 TCTCACGCCGTG 146207 | | |||||| Sbjct 4758 GCGTATGCCGTG 4769 >seq738 Length=22000 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || |||||| ||||| Sbjct 12299 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 12240 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||| ||||||||| |||||||||||||| | || Sbjct 12239 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 12180 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || || || ||||| || || ||||| Sbjct 12179 ATGCTGTCGGATGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAAAG 12120 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 12119 ATCTGCATG 12111 >seq391 Length=25901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| | | | | ||| | | |||||||| || || |||||||||||| | || Sbjct 599 GGCATGAACTCTGCGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTGTT-GTA 541 Query 47472 CA-GCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530 | ||| ||||||| ||| || |||| || ||||| | ||| ||| || Sbjct 540 CTCGCTGGGTGCGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGAT 481 Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||| |||||||||||||||| || ||||||||||| ||||| || Sbjct 480 CTCGCTACAGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTA 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475467865625840