Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq369 239 6e-58 seq97 96.9 4e-15 >seq369 Length=26862 Score = 239 bits (264), Expect = 6e-58 Identities = 1117/1749 (64%), Gaps = 66/1749 (4%) Strand=Plus/Plus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| |||||||||||||||| ||||||||| || | ||||| || | |||||| Sbjct 4326 GTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAACTT 4385 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 || || || | ||| | ||||| ||| || ||| || || Sbjct 4386 ACTGATCGTCGGGTCGGCAATGTGAATGTTCAACGACTGGCTCTGGCAAATGTAGGCGCC 4445 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 || ||||||| || || | ||| ||||| ||||||||||||||| || |||| Sbjct 4446 ACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATTTCCCACACTGTCTTGTACTT 4505 Query 115743 GTTCTTAATATCATCTGGGATA---TCCACGATATTTTGGATAGAGCCACCTGCCTTGAC 115799 | ||| | | || || || | ||| || || | |||||||| | | Sbjct 4506 CTCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAG---C 4559 Query 115800 CATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAG 115856 || || | || || || | ||||| || | || | || || | || ||| Sbjct 4560 CAGGATCTGGTTGCGCACCTCAGGCGTCCAGATTCCCAGCTCGATCAGCTCTTTCATGAG 4619 Query 115857 GTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGT 115916 || ||| || || | |||||||| || || ||| | || ||||| | ||| Sbjct 4620 GTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGT 4679 Query 115917 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGG 115976 || ||||| | | |||| ||||| ||||| || || || || || || |||||||| || Sbjct 4680 ATACGGCTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGG 4739 Query 115977 TGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCA 116036 |||| ||| || |||||| | || | | | | |||||||| || ||| Sbjct 4740 AGCCACGAGGAGCGAGTTGCGTATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGTCCA 4799 Query 116037 GTCGTA-------GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTT 116089 ||| | | || | ||| | ||| ||||| || ||||||| |||||| | Sbjct 4800 GTCCCACAAACCGGAAGA-CGGGGTCACGCCC---CACATGTCGAACTGGAAGATACCCT 4855 Query 116090 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGC 116149 | || ||||| |||| || ||||| || |||||| ||| || | || Sbjct 4856 TGCTGGCAGGCGAGCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTCCATCG 4915 Query 116150 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT--TGCCTT--- 116204 || ||| | | |||| || || ||||| || ||| ||||| || || Sbjct 4916 ACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATG------TTCATGTTGAGTTCAC 4969 Query 116205 GGCCTCGTCGGAA-TCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCTTGG 116262 || || | || || ||||| | | || | |||||| ||||||||||||| ||| Sbjct 4970 GGGCTTGCGGGCTCTCGAACGC-ATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGG 5028 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAA 116322 ||||| | |||| ||||| || | ||| || ||||| || || ||| ||||| || Sbjct 5029 ACACCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGTGCCTCCTCGACGGGGTAG 5088 Query 116323 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 116382 | || ||| || ||| |||| | || ||| || ||||| || | || | ||| Sbjct 5089 TAGTTGACATCAATGACCTTATTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGC 5148 Query 116383 TTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCC 116442 || | ||| | || | || | || | ||| |||| || ||||| | |||||| Sbjct 5149 TTCTGGTAGTTGAAC-----ACTC-CATCCTCCACAAACTTGGGGAGGGCCACAGACGCC 5202 Query 116443 AGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT- 116501 || || ||||| | |||||| |||||||| ||||| || ||||| || Sbjct 5203 AGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAGTTG 5262 Query 116502 --TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 ||| | || ||||| | ||||| || || ||||| ||| ||| |||||| Sbjct 5263 CTTGAGCGG---ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTG 5319 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCG 116619 || ||||| | ||| || ||||| | || | | || || || ||| || | Sbjct 5320 TACAGCATGAACGGCACGCCTGTCTCAATCTGCGCGTCCAGGATGGCGAACCA--CAGCT 5377 Query 116620 GCGGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 116675 || | ||| | | | ||| || || ||||||| ||||||||| ||| || | Sbjct 5378 GCTG--GGCGTTGATCGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTCTCGTACAGCGT 5435 Query 116676 CTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAG 116734 ||| ||||| || ||| |||| ||| |||| || || |||| | || ||||| || Sbjct 5436 CTCGAACTCGTCGCCC-CAGCACTCGTAGAGTCCGGGGGCCTCGTTGGGGCAGAACAGGC 5494 Query 116735 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGA 116794 ||| | ||| | |||| || ||||||||||| || || |||| ||| || || | | Sbjct 5495 TCCACTTGCCATTCGCCTCCACGCGCTTCATGAACAGATCGGGGACCCACAGAGCGTAAA 5554 Query 116795 AGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 116853 | | || || || | || | || | || ||||| ||||| ||||| || || Sbjct 5555 ACAAGTCGCGCGCGCGGTGCAGC-TCGTTACCGTGATTCTTACGCAGCTCCAGGAACTCG 5613 Query 116854 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCA 116910 | | || ||||||||||| |||||||| | |||| || || ||||| | || Sbjct 5614 AACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGATCCTTTGCGCTTGCCTCCG 5673 Query 116911 GCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCA 116970 |||||| ||||| | ||||| |||| || || | ||||| || ||||| || | Sbjct 5674 CCCTGGTCCACATAGCGAGCCGTGTCGTTGAAGACCCTCAGCATGGGGATGATCCCGTTG 5733 Query 116971 GATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATA 117030 ||| || || || || || || || |||| | || | ||| || || Sbjct 5734 GATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTAATG 5793 Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090 |||||||| || |||||||| ||||| ||||||| | |||| || |||| || || Sbjct 5794 CCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCC 5853 Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 117150 || |||||||| ||| | || | |||||||| ||||| || || | || || Sbjct 5854 TCAATCGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGTG 5913 Query 117151 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTA 117209 || ||||| ||||| || || |||||||| | || | || | || ||||| ||||| Sbjct 5914 CCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGCTCGTA 5972 Query 117210 GGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACAT 117269 || | || | | | ||||||| | ||| ||||| | | || ||||| | ||| Sbjct 5973 CGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGGATACCCAGCGCCACGCGCATGATCAT 6032 Query 117270 GTATTGGGG 117278 | ||||| Sbjct 6033 CTGCTGGGG 6041 >seq97 Length=51161 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 176783 AGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCG 176842 || ||| |||| | || || || ||||| | || |||||||| || ||||||||| Sbjct 37790 AGCTGCACCACAGTCGCATCACGCACATTCAGAAGTTTGCCGCGGAGGGGAAACACACCG 37731 Query 176843 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 176902 ||||||||||| |||||||| | |||||||| || || || | ||| || |||||||| Sbjct 37730 TAGTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCT 37671 Query 176903 TCCGTCACGATGAGCG 176918 || |||| || |||| Sbjct 37670 TCAGTCAAAATTAGCG 37655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613464706957560