Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq391 325 4e-84 seq138 123 2e-23 seq33 114 1e-20 seq738 113 5e-20 seq41 98.7 1e-15 >seq391 Length=25901 Score = 325 bits (360), Expect = 4e-84 Identities = 559/799 (70%), Gaps = 22/799 (3%) Strand=Plus/Plus Query 132723 CAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAG 132782 ||| | |||||||||||||||||||||||| ||||| | | || | || | ||| Sbjct 546 CAGGCGGTCGGCCACGAACTCGATGTATTGGCACATGAGCGCAGAGTTCATGCCGATCAG 605 Query 132783 ACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGA 132841 ||| || || | || | | ||| ||| |||| || | || ||||| |||| Sbjct 606 CTCCACGGGGAGGGAATCACTCACGAACTCGT-GCTCAATCACCACAGCGTCACGCACGA 664 Query 132842 TTTCCCTAACGCGCGCCGCGCTCGGCCG-TTG--CACCAAATGCTTGAACATCAAGCAAG 132898 | | | | |||| | | | |||| | ||| |||||| | | | |||| | ||| | Sbjct 665 T--CGCGTGCACGCGGCTCTC-CGGCAGCTTGTTCACCAACTTCGAGTACATGAGGCACG 721 Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958 | ||||| |||| ||||||||||| | ||||| ||||| ||| ||| || | Sbjct 722 CGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAG 781 Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018 ||||||||||||| ||||||||||| || |||| | ||| |||||| ||||| | || Sbjct 782 GCATGAGGCCGCGCTTTTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGC 841 Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCC 133078 |||| ||||| ||||| |||| ||||||||| | | | | | || | | | Sbjct 842 CCTCCACGGCAGCGAACGCCAGCAGGCGCTCCGGGTAGGACGACAC---GCGAGGGTCAC 898 Query 133079 AGCGC---AGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCA 133135 | | | |||||||| |||||| | | |||||||| ||||| |||||||| || Sbjct 899 ACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCA 958 Query 133136 ACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGAATACA 133192 || || | | || ||| || | | ||| |||||||| || ||| |||| Sbjct 959 GCA---GGTGATCCTTCTCCACGGCGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACA 1015 Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252 |||||||| | |||||| || ||||| || |||||||| ||||| || ||||| || Sbjct 1016 CCTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCA 1075 Query 133253 CCTGCACTTCTTGAGCGAAACGC-TCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCG 133311 ||||||| || | ||| | ||| |||| || ||||| ||||||||||||||||| Sbjct 1076 CCTGCACCTCATTGCTGAAGTTCATCG-CCAGGTTCTCGTTCACGATGCCGTCGCTGGCA 1134 Query 133312 GCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAG 133371 ||||| || |||||||||||||||||||| || |||||||||||| ||| | | ||||| Sbjct 1135 GCGAAGAACGCCAGCACGTGCTTGATGAAGTGACGCTCGTTGTCGGTCAGGTTCCCCCAG 1194 Query 133372 TCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTT 133431 || | ||| | |||||||| ||||||| | ||||| ||||||||||| || || Sbjct 1195 TCCTTCAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTC 1254 Query 133432 TTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTT 133491 |||||||| ||||| ||| | || || || || | ||| |||||| ||||| Sbjct 1255 TTGTACATCTGCCACACGTCGTGCTCCTGGATCGGGAACAGCACGAACCGGTTTGGGTTC 1314 Query 133492 TCGCGCAACAGCGGCTCCG 133510 || ||| | |||||||| Sbjct 1315 TCCACCAAGAACGGCTCCG 1333 >seq138 Length=77892 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || | |||||||| || ||||| | ||||| ||| | Sbjct 13193 AAGATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACTTTGGACGTGGAGCCG 13134 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 | ||| | | | | || | ||||| | ||||| || || || |||||| || Sbjct 13133 TCGGACTCGATCGACAATGTGAAGCAGAAAATTCAAGACAAGGAAGGCAT-CCCGCCTGA 13075 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || |||| ||| ||||| ||||| || |||| ||||| || | |||||| Sbjct 13074 CCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTA 13015 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | ||||| || ||||||||||| || | || ||| Sbjct 13014 CAACATCCAGAAGGAGTCAACGCTACACCTGGTGCTGCGTCTGCGCGGTGGC 12963 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| || ||||| | ||||| ||| | | Sbjct 12962 ATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACTTTGGACGTGGAGCCGTCG 12903 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 ||| | | | | || | ||||| | ||||| || || || |||||| ||||| Sbjct 12902 GACTCGATCGACAATGTGAAGCAGAAAATTCAAGACAAGGAAGGCAT-CCCGCCTGACCA 12844 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||| ||||| ||||| || |||| ||||| || | ||||||||| Sbjct 12843 GCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 12784 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | ||||| || ||||||||||| | | ||||| Sbjct 12783 CATCCAGAAGGAGTCAACGCTACACCTGGTGCTGCGTCTACGTGGCGG 12736 >seq33 Length=70540 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||| | ||||| || || ||||| | ||||| ||| | | Sbjct 19362 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCTTCG 19303 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | ||||||| ||||| || || || || | ||||| Sbjct 19302 GACTCGATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCA 19244 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 19243 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 19184 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || ||||| ||||||||||| Sbjct 19183 CATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGT 19147 Score = 114 bits (126), Expect = 1e-20 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || || ||||| || || || || ||| | ||||| || || ||||| | ||||| ||| Sbjct 19596 AAGAACATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAG 19537 Query 38298 GCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | | ||| | | |||| | || | ||||||| ||||| || || || || | Sbjct 19536 CCTTCGGACTCGATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCC 19478 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 ||||| ||||| | || | ||| ||||| |||||||| |||| ||||| || | ||| Sbjct 19477 TGACCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGA 19418 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| ||||| | || ||||| |||||||||| || | || ||| Sbjct 19417 CTACAACATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGCGTGGTGGC 19363 >seq738 Length=22000 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || ||||| || |||||||| | ||||| ||| | || Sbjct 12112 ATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCATCACGCTGGACGTGGAGCCATCC 12171 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||||| ||||| || || || |||||| ||||| Sbjct 12172 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCAT-CCCGCCTGACCA 12230 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 12231 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 12290 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 12291 CATCCAGAAGG 12301 >seq41 Length=66094 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 38346 GGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCG 38404 ||||| |||||| ||||| ||||| || || | ||| ||||| |||||||| |||| || Sbjct 28145 GGAAT-CCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCG 28203 Query 38405 CACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 ||| || |||||||||||||| |||||| |||||||| ||||||||||| || | Sbjct 28204 CACTCTTTCGGACTACAACATCCAGAAGGAAAGCACGCTGCACCTGGTGCTGCGTCTGCG 28263 Query 38465 AGGCGG 38470 || || Sbjct 28264 TGGTGG 28269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500138156781440