Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq556 383 2e-101 seq947 120 4e-22 seq97 95.1 2e-14 seq237 93.3 5e-14 >seq556 Length=20046 Score = 383 bits (424), Expect = 2e-101 Identities = 1037/1573 (66%), Gaps = 23/1573 (1%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||||| || || ||||| || || || | |||||| || || || || || Sbjct 4768 TTCATCTTGGTCCTTGTACTTCTCGGCGTCATCGACCATGCGGTCGATCTCGGATTGGGA 4827 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | || ||||| || ||||| ||||| ||||| | ||| |||| | ||| || | Sbjct 4828 CAGTCGACCCTTGTCGTTCGTGATCGTGATCTTGTTCTCTTTGCCCGTCGACTTCTCCAC 4887 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 ||| || |||||||| ||||| |||| || |||||| | || | ||| || || Sbjct 4888 AGCCGACACGTTCAAAATGCCATTGACATCCACGTCGAACGTCACGTCAATCTGCGGCAC 4947 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| | ||| || || || || | | ||| | || || | | || || Sbjct 4948 ACCGCGCGGCATGGGCGGGATGCCGTCCAGGTTAAACTTGCCCAGAAGATGATTGTCACG 5007 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGC 6867 | | | || ||||| || | |||| || |||| | | ||| || || Sbjct 5008 GGTCATGGACCGCTCACCCTCGAACACTTGGATCAACACCCCCGATTGGTTGTCCGCGTA 5067 Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 ||| ||||| || | ||||| | ||||| |||||| || | ||| || | | || Sbjct 5068 CGTCGAGAACGACTGCGCCTTCTTGGCTGGAACCGTCGTGTTGCGCGGGATCAACTTCGT 5127 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||| | || || || || | || ||||||| || | ||| |||| || | ||| Sbjct 5128 CATGACTCCGCCAGCCGTCTCCAACCCTAGAGACAACGGCGCCACATCCAGTAGCAGCAG 5187 Query 6988 GTCTTG-AACAGATTCGTTCCCT--TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCC 7044 ||| || ||| || || | || | | |||||| || || || || || || Sbjct 5188 GTCCTGCAACTTGGACGACGACTCATGGCCGCTCAGGATGGCCGCCTGCACTGTAGCACC 5247 Query 7045 GTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATC 7104 ||| ||||| || || || ||||| || | || ||| || |||||||| ||| | || Sbjct 5248 GTAGGCGACAGCTTCGTCCGGGTTGATTGACTTGAACAGCTCCTTACCGTTGAAAAAGTC 5307 Query 7105 CGAT-AACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCAT 7163 ||| |||| || |||| || ||||| || ||||| || ||||||| || | || | Sbjct 5308 -GATCAACAACTGCTGAACCTTGGGGATACGCGTCGAGCCCCCGACCAGCACCACCTCGT 5366 Query 7164 TCACTT-TCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222 |||||| || || | | ||| |||||||| || | | || || ||||| Sbjct 5367 TCACTTGTCTCTTGGAC-AGCTTCGAGTCTCGTAGAACCTGCGCCACCGGGTCCATCGTC 5425 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 || || || || || ||| || |||||||| |||||||| ||||||| | | |||| Sbjct 5426 TTGCGAAAGAATTCACCACAAAGATCCTCAAACCGTGCACGCGTAATGGTCGAGTTGAAA 5485 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 || || || || ||||| ||||| || ||| | || || | || || | || Sbjct 5486 TCGACACCATCCAGCAACGAGTCAATCTCGATGTACGCCTGCGCAGACGTCGACAGTGTA 5545 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 ||||| || |||||||||||||| || | ||| || | ||||||| ||| | ||| Sbjct 5546 CGCTTAGCACGCTCACACGCCGTACGGAGACGGCGCATAGCACGCGAGTTCACCTTCATA 5605 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTT---CAGAGAAGT-GTCGAAGGAGTCTCGAATC 7458 || || || || || ||||| || | | |||| | | | ||| || || Sbjct 5606 TCCTTGCGATACTTGCGCTTAAATTCCTGCACGAAGAACTCGACCAAGCGGTTG----TC 5661 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 ||| ||||| || |||| || ||||| || || ||||| || || || |||||||| | Sbjct 5662 GAAGTCTTCGCCGCCCAGATGCGTATCGCCTGCCGTCGCCTTCACCTCGAAGATACCCTC 5721 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 |||||| | | | || || |||||||| || || |||||||| || || | ||||| Sbjct 5722 TTCAATAGTGAGGAGGGAGACGTCAAACGTTCCTCCGCCCAGGTCGAAGATCAACACGTT 5781 Query 7579 CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 || | | || ||| || ||||||||||| || || || ||||| || || || Sbjct 5782 GTGCTCTCCACCCTT---CTTGTCCAGACCGTACGCAATTGCAGCGGCCGTGGGCTCGTT 5838 Query 7639 AATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 |||||||| || ||||||||| ||||| | | | || || || ||||| || || || Sbjct 5839 GATAATACGCAGCACGTTCAGGCCGGCAATGGCTCCGGCGTCCTTGGTCGCCTGCCGCTG 5898 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 || ||||| ||||||||||| ||||| || || |||| | | || | |||||| | || Sbjct 5899 TGAGTCGTTGAAGTAGGCCGGCACCGTCACCACTGCGTTCTTCACCTGCTTACCAATGTA 5958 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818 | |||||||| || ||| ||| || ||||| || || ||||| || | | || Sbjct 5959 GGCCTCCGCGATCTCGCGCATCTTGACCAGCACCATGGACGAGATCTCCTCGGGCTGGAA 6018 Query 7819 CTGTTTCGTT-TCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGA 7877 ||| | || | | || || | || | | || |||| | | | || | Sbjct 6019 -TGTCACCTTCTTGTCTTTGAACTGCACCACCACTTCCGGCTTATTCTCCGGCCCTCGAG 6077 Query 7878 TAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTC 7937 || || ||| ||| | || || || || || | | || | ||||| | | Sbjct 6078 CCACTTTGAACGGCCAGTGCTTGATGTCCGACTGCACTTCAGGATCGGTGAACTTACGCC 6137 Query 7938 CGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCG 7997 |||| | |||||| | ||||| || ||||| | | ||||||||| ||||||||| | Sbjct 6138 CGATCAAACGCTTGACGTCAAACACCGTGTTGTGCGCGTTCATGGCCACTTGGTTCTTGG 6197 Query 7998 CCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTC 8057 | || || ||||| ||||| || | |||| ||||| || || || || ||||| | Sbjct 6198 CGGCATCACCGATCAGACGCTC---CGTGCCCGTGAACGCCACATAGGACGGTGTCGTGC 6254 Query 8058 GATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACG 8117 | || || |||||||||||||| || || || |||||||| ||||| ||||| ||||||| Sbjct 6255 GGTTGCCCTGGTCGTTCGCAATGATCTCCACACGGTCGTTCTGCCACACGCCCACGCACG 6314 Query 8118 AATACGTTGTTCC 8130 | || || || || Sbjct 6315 AGTAGGTCGTGCC 6327 >seq947 Length=12728 Score = 120 bits (132), Expect = 4e-22 Identities = 446/698 (64%), Gaps = 12/698 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| || || || | || | ||||| |||||||| || Sbjct 6897 TCGAAGTCCTCACCACCAAGGTGCGTGTCTCCACCCGTGGACTTGACCTCAAAGATGCCG 6838 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || || | ||| ||||| || ||||| ||||||||||| || || || ||| Sbjct 6837 TTCTCGATCGACAAGATCGACACATCGAAGGTACCGCCACCCAGGTCGAAGATAAGCACG 6778 Query 7577 TT------CGTATCGTC---GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCC 7627 || ||| |||| | | |||| | ||||| |||||||||| || || ||| Sbjct 6777 TTGCAGGCCGTGCCGTCCGTGCCAGCGTTCGTGTCGAGGCCGTACGCGAGGGCAGCAGCC 6718 Query 7628 GTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTC 7687 || || || || || ||||| || || || || || | | || || || ||| Sbjct 6717 GTGGGCTCGTTGATGATACGCTTCACGTCGAGACCGGCGATCGAGCCTGCGTCCTTTGTC 6658 Query 7688 GCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTC 7747 | || || ||| ||||| ||||| || || || || || || || | ||| || Sbjct 6657 GACTGACGCTGCTGGTCGTTGAAGTAAGCGGGCACAGTGACCACAGCCTGGCTGATGCTC 6598 Query 7748 TTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCT 7807 | || || | | || || | || ||||| || ||||| || || ||||| Sbjct 6597 TGGCCCAGGAAGGCCTCGGCCGTCTCCTTCATGCGCAGCAGCACCATGGACGAGATCTCC 6538 Query 7808 TCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCA 7867 |||| | || ||| | ||||| || || ||||| || |||| | || || | Sbjct 6537 TCAGGGGTGAAGCTCTTCTTATCACCCTTGAACTCAACCTCGATCAGGACCTTGTCATCG 6478 Query 7868 GCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAA 7927 |||| | | | | | | | | || || | | ||| | ||| Sbjct 6477 TCACCCTCCTTGATCGTGAAGGGGAAGTGCTTGGCGTCCTTCTTCACCACCTCGTCGCTG 6418 Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 || | | ||||| | |||||| ||||| || || ||||| ||| ||| ||| | Sbjct 6417 AAGCTGCGGCCGATGATACGCTTGGCATCGAACACCGTGTTAGTGGCGTTACCGGCGGCC 6358 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 ||| |||| || || || ||||| ||||| || | || | || ||||| |||| Sbjct 6357 TGGATCTTAGCGGCCTCACCGATGAGACGCTC---GCTCTCGTTGAAGGCGACCCACGAA 6301 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 |||||||| || || || | | ||| || || || || || || ||| | ||| ||| Sbjct 6300 GGGGTCGTGCGGTTGCCCTCGCTGTTGGCGATGATCTCCACCTGGCCGTCCTTCCATACG 6241 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 || |||||||| ||||| || || || ||||| || || Sbjct 6240 CCCACGCACGAGTACGTCGTGCCCAAGTCAATGCCAAT 6203 >seq97 Length=51161 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 184205 ACACTCGCGTCACGCACGTTCTTACATTTACCCCTAAGCGGAAAAACACCGTAATGATCA 184264 ||| |||| |||||||| ||| | ||| || | || ||||| |||||||| |||||| Sbjct 37781 ACAGTCGCATCACGCACATTCAGAAGTTTGCCGCGGAGGGGAAACACACCGTAGTGATCA 37722 Query 184265 CGACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATA 184324 || ||||| |||| |||||||| | || |||| || |||||||||||||| || | | Sbjct 37721 CGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCTTCAGTCAAA 37662 Query 184325 ATAAG 184329 || || Sbjct 37661 ATTAG 37657 >seq237 Length=33969 Score = 93.3 bits (102), Expect = 5e-14 Identities = 181/265 (68%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 7534 CGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTT 7593 ||| ||||| || ||||| ||||||||||| || | | | | | | ||||| | || Sbjct 14754 CGACACATCGAAGGTACCGCCACCCAGGTCGAAGACGGCGATGACCTTGCCGTCGGCCTT 14695 Query 7594 GTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653 || | | ||||| |||| || || ||||| || ||||| || ||||| || Sbjct 14694 GTCCATG------CCGTAGGCGAGGGCAGCAGCCGTGGGCTCATTGATGATACGGAGCAC 14641 Query 7654 GTTCAGGCCAGCAATAGTTGCCG-CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 || ||| || || || |||||| | || || || || || || ||||| ||||| |||| Sbjct 14640 GTCCAGACCGGCGATC-TTGCCGGCGTCCTTGGTGGCCTGACGCTGCGAGTCGTTGAAGT 14582 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 ||||||| || || ||||| || | |||| ||| || || | || || | | Sbjct 14581 AGGCCGGAACGGTGACGACGGCCTGTGTGATGGGCTTGCCCAGGAAGCCGTCGGCAGTCT 14522 Query 7773 CTTTCATTTTGGTAAGAACCATCGA 7797 | ||||| ||||| || ||||| || Sbjct 14521 CCTTCATCTTGGTGAGCACCATGGA 14497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635088809114440