Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq702 93.3 5e-14 seq97 82.4 9e-11 >seq702 Length=16857 Score = 93.3 bits (102), Expect = 5e-14 Identities = 203/298 (68%), Gaps = 7/298 (2%) Strand=Plus/Minus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 ||||| || || || ||||| || || |||| || | ||||| ||||| |||| || Sbjct 13844 GATCTGCCGGTCGAATCGACCGGGACGCAGGATAGCCTTGTCAAGAATATCGGCGCGGTT 13785 Query 15938 CGTTGCGGCGATGACAACAATACC-TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAA 15996 ||| | || | || || | ||| | ||| | ||| ||||||||||| || | Sbjct 13784 CGTACCAGCAAGCACCACCACACCCTCACTCGAGTTGAAA-CCATCCATCTCCACCAGCA 13726 Query 15997 GCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACT-GCGTTGC 16055 ||||||||| || | ||| || || || || || | || | | || || || | || Sbjct 13725 GCTGGTTAAGCGTGTTTTCACGCTCGTCGTT-GCCGCCAGAGAAGTTGCCCTTGCTTCGC 13667 Query 16056 TTTC---CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 16112 | |||| |||||||| ||||| ||||| || |||||||| || ||||||| Sbjct 13666 GCACGGGCCACAGCATCAATTTCATCGATGAACACAATGCATGGAGCGTTCGCGCGAGCC 13607 Query 16113 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT 16170 | | || ||||| ||||||||| | ||||||||||| ||||| || | |||| Sbjct 13606 TCCTTGAACAGATCACGTACACGCGACGGACCCACACCAACGAACATTTCGATGAAGT 13549 >seq97 Length=51161 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 176885 ACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCG 176944 |||| |||||||| |||||| | || || || || || || |||||||||||||| Sbjct 37781 ACAGTCGCATCACGCACATTCAGAAGTTTGCCGCGGAGGGGAAACACACCGTAGTGATCA 37722 Query 176945 CGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCA 177002 || |||||||| | ||||| || || || || | || ||||||||||| || |||| Sbjct 37721 CGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCTTCAGTCA 37664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620699405829520