Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq369 205 1e-47 seq702 176 5e-39 seq391 87.8 2e-12 >seq369 Length=26862 Score = 205 bits (226), Expect = 1e-47 Identities = 685/1049 (65%), Gaps = 33/1049 (3%) Strand=Plus/Plus Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151 || ||||| ||||||| |||||||| ||||| | ||||| ||||| || |||||| Sbjct 5002 AGGATAAATGCATCCGCGAGACCCTGGACACCAATACCAACCGGGCGGTGGCGCATGTTG 5061 Query 110152 GAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211 || || || || |||||||| ||||| || |||||| ||| | ||| Sbjct 5062 GACTTGCGTGCCTCCTCGACGGGGTAGTAGTTGACATCAATGACCTTATTCAAGTTCCGG 5121 Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271 ||||| ||| || | || | || || | ||| | |||| | |||| Sbjct 5122 GTCACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAACACTCCATCCTCC------ 5175 Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG--G 110329 ||| | |||||||| || | |||||| || |||||||| | ||| || | || | Sbjct 5176 ACAAACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCG--GGCGACG 5233 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTG---GAACTCTTAATGACACCCAAGTTCTTCT 110386 |||| |||| ||| || ||||||||| || | | || || | ||||| || Sbjct 5234 TGTACTCCATAATCTCGCAGCACAAGTTGCTTGAGCGGATCGTG---CCGAGGTTCTGCT 5290 Query 110387 GATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCT 110446 | ||||| ||| |||| || ||||| || |||||| | || || || || ||| Sbjct 5291 GGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCTGTCTCAATCT 5350 Query 110447 GTGACTTGAGAATGGCCTTCCATACATCGGC--GGCGGGGACAGT--TGCGTTAGCGAGA 110502 | | | || ||||| ||| || | || |||| || || |||| ||| | Sbjct 5351 GCGCGTCCAGGATGGCGAACCA--CAGCTGCTGGGCGTTGATCGTCTTGCGC--GCGCGT 5406 Query 110503 CCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAAG 110561 || |||| ||||||||| ||||| ||| || || | || | ||| || | || Sbjct 5407 CCCTCCTTCTCGTACTTCTCGTACAGCGTCTCGAACTCGTCGCCCCAGCAC-TCGTAGAG 5465 Query 110562 ACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCAT 110621 || |||| || ||| ||||| ||| ||| || ||| | |||| || | |||||| Sbjct 5466 TCCGGGGGCCTCGTTGGGGCAGAACAGGCTCCACTTGCCATTCGCCTCCACGCGCTTCAT 5525 Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTCTTCATCAC 110680 |||||| || || | ||||| || | || | ||| || || | || || | | || Sbjct 5526 GAACAGATCGGGGACCCACAGAGCGTAAAACAAGTCGCGCGCGCGGTGCAGCT-CGTTAC 5584 Query 110681 CTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA 110740 | || || || ||||||| || || | | || | |||||| || || || |||| Sbjct 5585 CGTGATTCTTACGCAGCTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGA 5644 Query 110741 CAGCGATGGATCCCTTACGACGACC--CGCC-TGGTTAACATAGCGTGCTGTGGCATTGA 110797 |||| ||||| || || || |||| |||| |||||||| || ||| | |||| Sbjct 5645 TGGCGAACGATCCTTTGCGCTTGCCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTGA 5704 Query 110798 AGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACT 110857 ||||||| ||||| || || || || | |||| || || || || | || | | Sbjct 5705 AGACCCTCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGT 5764 Query 110858 TATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTG 110917 | |||| || |||| ||| ||| || |||||||| || |||||||| || | Sbjct 5765 TCGTGGCGCGGATGTTGTGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACG 5824 Query 110918 CACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAA 110977 | |||| |||| || | ||||| || |||||||| || ||| |||| | || | Sbjct 5825 CGCACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGA 5884 Query 110978 AGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAA 111037 |||| || |||| ||| ||||| ||||| || || || ||||| || || ||||| || Sbjct 5885 AGCACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCG 5944 Query 111038 TGAACAGACCT-TGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCG 111096 | || | || | || ||||| | ||| |||| ||||| | | | |||| | Sbjct 5945 TAAAGA-ACATCTGTGACATGAGCTCGTACGTGTGCAGTGCCGCCTGGATGTCTTGCTTG 6003 Query 111097 TGAATACCAATGGCAACTCGCATGAACAT 111125 || ||||| | || || ||||||| ||| Sbjct 6004 TGGATACCCAGCGCCACGCGCATGATCAT 6032 >seq702 Length=16857 Score = 176 bits (194), Expect = 5e-39 Identities = 352/514 (68%), Gaps = 16/514 (3%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | ||| | |||||||||||| | ||||| Sbjct 13843 ATCTGCCGGTCGAATCGACCGGGACGCAGGATAGCCTTGTCAAGAATATCGGCGCGGTTC 13784 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | |||| || || | || |||| | || |||||| ||||| || || Sbjct 13783 GTACCAGCAAGCACCACCACACC---CTCACTCGAGTTGAAACCATCCATCTCCACCAGC 13727 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 |||||||| | ||| | ||||||||| |||||| | || | | |||| ||||| Sbjct 13726 AGCTGGTTAAGCGTGTTTTCACGCTCGTCGTTGCCGC-CAGAGAAGTTGCCCTT-GCTTC 13669 Query 11674 TTAC-----CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | | ||||| ||||| ||||||||||| || || || || ||| || || | Sbjct 13668 GCGCACGGGCCACAGCATCAATTTCATCGATGAACACAATGCATGGAGCGTTCGCGCGAG 13609 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| | ||| || |||||||||||| || || ||||| |||||||| || | ||||| Sbjct 13608 CCTCCTTGAACAGATCACGTACACGCGACGGACCCACACCAACGAACATTTCGATGAAGT 13549 Query 11789 TTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | |||| | ||||| ||| || || | | ||| ||||| |||| || || Sbjct 13548 CCGAACCAGAGATGCTGAA-GAACGGCACGCTGGCCTCGCCAGCCGTGGCCTTCGCCAGC 13490 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 || ||||||||||||||||| | ||| | || || ||||| ||||||||| |||||| Sbjct 13489 AGCGTCTTACCCGTACCAGGCGGGCCAACAAGCAGCGCGCCCTTGGGGATCTTCGCACCA 13430 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 | | |||||| | || ||||||||||| | |||| | ||||| ||| Sbjct 13429 AGCTCCGTGAAGCGCTTCTGGTTGCGAAGGAAGTCCACGAACTCCATGATTTCCTTCTTT 13370 Query 11968 GCGGAGTCGATACCCTCAACATCGGTGAAACGAG 12001 || ||| | ||| |||| || || |||||| Sbjct 13369 GCCTCGTCCACACCGGCAACGTCCTTG-AACGAG 13337 >seq391 Length=25901 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/216 (69%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || || ||||| ||||||||| || ||||| || ||||||||||| || | || Sbjct 739 CCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTT 798 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| || || || || ||||| ||||||||||| ||||| Sbjct 799 TTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCACGGCAGCGAAC 858 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGAC----TTGTCGAACCACTTGAGAGCCCAGTT 119689 || | || ||||| | ||| ||| || ||| |||||||||| |||||| Sbjct 859 GCCAGCAGGCGCTCCG-GGTAGGACGACACGCGAGGGTCACACCACTTGAGCGCCCAGCG 917 Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 |||||| ||| | ||| |||| || | |||||| Sbjct 918 GGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588935206049800