Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq369 196 6e-45 seq391 113 5e-20 >seq369 Length=26862 Score = 196 bits (216), Expect = 6e-45 Identities = 739/1143 (65%), Gaps = 41/1143 (4%) Strand=Plus/Plus Query 106271 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 106330 |||||| ||||||||||||| || ||||| | ||||| || | ||| ||||| || ||| Sbjct 5005 ATAAATGCATCCGCGAGACCCTGGACACCAATACCAACCGGGCGGTGGCGCATGTTGGAC 5064 Query 106331 TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 106390 || || || ||| ||||| || | || |||||||| || | || ||| Sbjct 5065 TTGCGTGCCTCCTCGACGGGGTAGTAGTTGACATCAATGACCTTATTCAAGTTCCGGGTC 5124 Query 106391 ACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 106450 || | ||| || | || | || || | || | || | || | || | ||| Sbjct 5125 ACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACA 5178 Query 106451 TACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 106510 |||| || ||||| | || |||| ||||| || ||| |||||| |||||| Sbjct 5179 AACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTAC 5238 Query 106511 TCTAAAATTTCTGTACACAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 || | ||| || ||||||||| || | ||||| || | |||| ||||| Sbjct 5239 TCCATAATCTCGCAGCACAAGTTGCTTGAGCGG---ATCGTGCCGAGGTTCTGCTGGTTC 5295 Query 106568 CTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAC 106627 ||| |||| ||| |||||||| |||||| | ||| || ||||| |||| | Sbjct 5296 GACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCTGTCTCAATCTGCGCG 5355 Query 106628 TTGAGAATTGCCTTCCACACATCGGCGGCTGGTACA--ATGGCGTTG---GCCCGTCCCT 106682 | || || || ||||| || ||||| || | ||| || ||||||| Sbjct 5356 TCCAGGATGGCGAACCACA-----GCTGCTGGGCGTTGATCGTCTTGCGCGCGCGTCCCT 5410 Query 106683 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCT 106741 || ||||||||| ||| || | || ||||| || ||| | || ||| |||| || Sbjct 5411 CCTTCTCGTACTTCTCGTACAGCGTCTCGAACTCGTCGCCC-CAGCACTCGTAGAGTCCG 5469 Query 106742 GGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAA 106801 || |||| || || ||||| || ||| | ||| | |||| || ||||||||||| Sbjct 5470 GGGGCCTCGTTGGGGCAGAACAGGCTCCACTTGCCATTCGCCTCCACGCGCTTCATGAAC 5529 Query 106802 AGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTG 106860 || || || | |||||| | |||| | || | | | | || | |||| ||| || Sbjct 5530 AGATCGGGGACCCACAGAGCGTAAAACAAGTCGCGCGCGCGGTGCAGC-TCGTTACCGTG 5588 Query 106861 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 106920 || || | ||| |||||||| | | || |||||||| ||||| || |||| || Sbjct 5589 ATTCTTACGCAGCTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGC 5648 Query 106921 GATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 106977 || ||||| || || | || | || | |||||||| || ||| |||| || || Sbjct 5649 GAACGATCCTTTGCGCTTGCCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTGAAGAC 5708 Query 106978 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTAT 107036 | ||||| || || || || | ||| || || || || || || || | || Sbjct 5709 CCTCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGAT-GTAGCTGTTCG 5767 Query 107037 TGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCAC 107096 |||| | | | || || || |||||||| || |||||||| ||||| ||| | Sbjct 5768 TGGCGCGGATGTTGTGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGC 5827 Query 107097 ACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGC 107156 ||| | | || || | || || || | || ||||| |||| |||| | ||||||| Sbjct 5828 ACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAGC 5887 Query 107157 AACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG---AA 107213 | |||| |||||| | || || || || || ||||| || || || ||||| || Sbjct 5888 ACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAA 5947 Query 107214 TGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGT 107273 |||||| || ||||| ||||| || | || | | | ||||||| | || Sbjct 5948 AGAACAT---CTGTGACATGAGCTCGTACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGT 6004 Query 107274 GGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGA 107333 |||| || | ||||| ||||| | ||| | ||||| |||| || |||| | | Sbjct 6005 GGATACCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTGCCGTTCA 6064 Query 107334 GCCGTTGAAGA--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 || ||||| |||| | ||| || ||||||| || ||||| | | ||| |||| Sbjct 6065 --CGCGGAAGAGGTAGCCCCGCTCGAGCGTTTTGAAGCCGAAGTAGTCGTACTCAAAGTC 6122 Query 107392 CCG 107394 ||| Sbjct 6123 CCG 6125 >seq391 Length=25901 Score = 113 bits (124), Expect = 5e-20 Identities = 349/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || ||||||||||||||||||||||| || | || || | ||||| Sbjct 433 TACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCATC 492 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGAC 117103 |||| || || |||||| |||| | || || |||||| | | || | || | Sbjct 493 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACGCACCC-AGCGAGTACAAC-AGGC 550 Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 | || | ||| |||| ||||| | | |||| | |||||||||| ||||| || | Sbjct 551 GGTCGGCCACGAACTCGATGTATTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 610 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 ||||| | || | |||| | | ||||||| | || || || |||||| |||| Sbjct 611 CGGGGAGGGAATCACTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 670 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAA 117278 | | | ||| || || | || ||| || | | | | |||| | || Sbjct 671 GCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAA 725 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 ||| ||| | ||||| || ||| || || || || ||||||| || || ||||| Sbjct 726 GTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 785 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398 ||| || ||||| || | ||| | || | |||||| || || |||||||| || ||||| Sbjct 786 GAGGCCGCGCTTTTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTC 845 Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTT-GTGTCAAACCATT 117457 ||| || ||||| | |||||||| | | |||| ||| || | |||| |||| | Sbjct 846 CACGGCAGCGAACGCCAGCAGGCGCTCCGGGTAGGA-CGACACGCGAGGGTCACACCACT 904 Query 117458 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | | ||||| ||||||||||| | || || | || | |||||| Sbjct 905 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589939936454840