Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq738 96.9 2e-15 seq33 84.2 1e-11 >seq738 Length=22000 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/198 (71%), Gaps = 11/198 (6%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| |||||||| || | || | || || ||||| || || || || || Sbjct 12299 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 12240 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG----- 34908 || || |||||||| |||| | || |||||||| || ||||| ||||| Sbjct 12239 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 12180 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 ||||| ||| | | ||| || || | || ||||| |||||||| || ||||||| Sbjct 12179 ATGCTGTCGGAT-----GGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCA 12125 Query 34969 CAAAGATCTGCAT-ATTC 34985 ||||||||||||| |||| Sbjct 12124 CAAAGATCTGCATGATTC 12107 >seq33 Length=70540 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || |||||||| || ||||| || Sbjct 19400 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAG 19459 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||| | || | || |||||||| || ||||| || ||| Sbjct 19460 ATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTG 19519 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| | ||||||||| Sbjct 19520 TCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACA 19579 Query 34971 AAGATCTGCATATTCGTAGACTTGTCGTGATT 35002 ||||||||||| ||| | |||||| || || Sbjct 19580 AAGATCTGCATGTTCTT---CTTGTCTTGGTT 19608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324611677188648