Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq382 179 3e-40 >seq382 Length=26401 Score = 179 bits (198), Expect = 3e-40 Identities = 440/663 (66%), Gaps = 13/663 (2%) Strand=Plus/Plus Query 29803 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 29862 || || || ||||| | ||| || || || ||||| || | ||| | ||| || || Sbjct 6110 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCACCGATAACGTGAATAAATTCACCA 6169 Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29922 |||| ||||| | || || |||| | |||||| | | |||||| || |||||| Sbjct 6170 GGTTTCAGCCCTGCCACTTGTGCCACTAGTCGCGTGAGCAACGCGTAGCTTGCAATGTTA 6229 Query 29923 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 29982 || || || || || ||||| || |||| | |||||| | ||||||||| | || ||| Sbjct 6230 AACGGCACACCAAGGCCCATATCGGCCGAGCGCTGGTACATCTGACACGACAATTCGCCG 6289 Query 29983 TCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 || |||||| ||||| || | |||| ||||| || || ||||| || || Sbjct 6290 TCCGCCACGTAGAACTGGCAGAACATGTGACACGGCGGCAGTGCCATCTCATTCAGATCA 6349 Query 30043 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT-GTTC----CTGATGA 30097 |||||||| || ||| | ||| || | ||| ||||| || | || |||| Sbjct 6350 GCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCATCGGGTTCGTACGCAGCTTATGA 6409 Query 30098 GGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCG 30157 ||| | | ||||| ||||| ||| || | ||| ||||| |||||||| Sbjct 6410 AT--CACCTCAGTA---AGCTGGTCCACTCCCTGTCCAGTGTAATCTGCGTGCATGTCCG 6464 Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217 |||||| || || ||||| | ||||||||| ||||| |||||||| || || || ||| Sbjct 6465 TGTACTTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACCGGTCCGAGATCACCTACTT 6524 Query 30218 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30277 | | || || || | | |||| | | || | ||| || || |||||||||| | Sbjct 6525 CGCGCGTCTGCAATCCTCGGCTATCCAGATACTCCCGGGACCCATTCCCGTCCCAGATGT 6584 Query 30278 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCT 30337 | |||||| ||| | | | | ||| || |||| ||||||||||||| Sbjct 6585 GAATGTCCTTCTGCTGCAGCGTGTGCGCGCTCGTGTCGCCGCTGATAAACCACAGCAGCT 6644 Query 30338 CCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC---TGTCCCT 30394 ||||| | ||| | ||| || || | |||||||||||| || || ||| | | | Sbjct 6645 CCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTTTCTC 6704 Query 30395 TGAGGCCGTACATGGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTCTC 30454 | || | | | | ||| | |||||||| ||||| || |||||||| | ||||| Sbjct 6705 TCAGACTGAAGCTCATCTGCGCTCCAAACACCGACAACGTGCCAGTGCCCGTGCGGTCTC 6764 Query 30455 CCC 30457 ||| Sbjct 6765 CCC 6767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408590005670393