Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq138 107 2e-18 seq33 107 2e-18 >seq138 Length=77892 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 ||||| || || || |||| ||||| || || ||||| |||||||| || ||||||||| Sbjct 12817 TGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGAATT 12876 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 || || || ||| | || | | ||| |||| ||||| || | ||||| ||| ||||| Sbjct 12877 TTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAAGTGATCGTCTTGCCC 12936 Query 101444 GTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || || || ||||||||| Sbjct 12937 GTCAAAGTCTTCACGAAGATCTGCATG 12963 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 ||||| || || || |||| ||||| || || ||||| |||||||| || ||||||||| Sbjct 13045 TGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGAATT 13104 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 || || || ||| | || | | ||| |||| ||||| || | ||||| ||| ||||| Sbjct 13105 TTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAAGTGATCGTCTTGCCC 13164 Query 101444 GTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || || |||||||| Sbjct 13165 GTCAAAGTCTTCACGAAGATCTGCAT 13190 >seq33 Length=70540 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || |||||||| || || || || ||||| ||| | || | | || |||| ||| Sbjct 19160 TGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGC 19219 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||||||||| || || || || |||||||| || ||||| ||||| Sbjct 19220 TTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATTTTC 19279 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | | ||| || | ||||| || || |||| ||| || || || Sbjct 19280 TGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTC 19339 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || || || ||||| ||||||||| Sbjct 19340 AACGTCTTCACAAAGATCTGCATG 19363 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || |||||||| || || || || ||||| ||| | || | | || |||| ||| Sbjct 19388 TGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGC 19447 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||||||||| || || || || |||||||| || ||||| ||||| Sbjct 19448 TTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATTTTC 19507 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | | ||| || | ||||| || || |||| ||| || || || Sbjct 19508 TGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTC 19567 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || || || ||||| ||||||||| Sbjct 19568 AACGTCTTCACAAAGATCTGCATG 19591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396251638948137