Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq138 116 3e-21 seq386 109 4e-19 >seq138 Length=77892 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | ||| |||| ||||| |||||||| ||| || || || ||||| || Sbjct 12736 CCGCCACGTAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 12795 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| || | |||||| || || || ||||| ||||| || || | || Sbjct 12796 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 12855 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||| || || || ||| | | || || |||| |||||| Sbjct 12856 ATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACG 12915 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || ||||| || ||||||||||| || || || |||||||| Sbjct 12916 TCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 12962 Score = 113 bits (124), Expect = 3e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| |||||||| ||| || || || ||||| || || | ||| Sbjct 12973 AGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGA 13032 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| || || || ||||| ||||| || || | || | ||| ||| Sbjct 13033 CCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCC 13092 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || || || ||| | | || || |||| |||||| |||| || Sbjct 13093 TTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAAGTG 13152 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||| || ||||||||||| || || || ||||||||| || Sbjct 13153 ATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTTG 13194 >seq386 Length=26155 Score = 109 bits (120), Expect = 4e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 9138 ATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACC 9197 ||| |||||||| | ||| |||||||| || | ||| || ||||||||||||| || || Sbjct 10167 ATGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCATCGATCACACCGGCGCC 10226 Query 9198 CACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCATCC 9257 ||||||||| | ||| | || ||||| ||||| ||||| | || |||| ||| | Sbjct 10227 AGTGTCGATGAACTTCTTAAGTGCGAGTCCGGAGCGCGGCGCCACGCGCGCGTAACAT-C 10285 Query 9258 CACCGGTAATTG-CACCCGCAAGTCGGTCATGACCAGCCCCTTGCCGTGTTTTGGAATCA 9316 || ||| || | |||| || ||| ||| |||| || || |||||| ||||||| Sbjct 10286 CAGCGGGAACGGCCACCACCAGGTCCGTCTTGACGAGGCCTTTGCCGCCCGCAGGAATCA 10345 Query 9317 CGGTGTCGTAGCCG 9330 | | ||||||| || Sbjct 10346 CAGCGTCGTAGGCG 10359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380911874926743