Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq369 340 3e-88 seq391 284 2e-71 >seq369 Length=26862 Score = 340 bits (376), Expect = 3e-88 Identities = 1037/1575 (66%), Gaps = 62/1575 (4%) Strand=Plus/Plus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||| || ||| ||| ||||| | ||||| | | | ||| | ||| || || || || Sbjct 4626 GTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTATACGG 4685 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||||||| ||||||||| |||| |||||| || || || |||||||| |||||||| Sbjct 4686 CTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCAC 4745 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG--CGCCGA-AGCTCTGCCCAGTC 213085 ||||| ||| | | ||||||| | || | | | || ||| | | |||||| Sbjct 4746 GAGGAGCGAGTTGCGTATGCCGTGCTTG---ATCACGTTCTCCTTGAGCGCAGTCCAGTC 4802 Query 213086 CCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145 ||| || || || || | |||| ||||||||| ||||| ||||| || || Sbjct 4803 CCA-----CAAACCGGAAGACGGGGT-CACGCCCCACATGTCGAACTGGAAGATACCCTT 4856 Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 ||| | || ||||||| | | ||| ||||| |||||||||| | ||| || Sbjct 4857 GCTGGCAGGCGAGCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTCCATCGA 4916 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 || || || | |||||||||||| || || || || | | ||||||| | ||| | Sbjct 4917 CGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGGCTTG 4976 Query 213266 TGGGGACGTGAAGGGCATCAT-CATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGA 213324 ||| | ||| | ||| | |||| | || |||| || || |||||||| || | Sbjct 4977 CGGGCTCTCGAACG-CATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGACACCAA 5035 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTG 213383 | || | || | ||| | || ||| |||||| | || |||||| | |||||| ||||| Sbjct 5036 TACCAACCGGGCGGTGGCGCATGTTGGACTTGCGTGC-CTCCTCGACGGGGTAGTAGTTG 5094 Query 213384 CAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCG 213443 || |||| ||| || | ||| ||||| |||| ||||| || | | ||| | || | Sbjct 5095 ACATCAATGACCTTATTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGCTTCTGG 5154 Query 213444 TGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTG 213503 | |||||||| || |||| |||||||| || ||||| | ||||||||| Sbjct 5155 TAGTTGAACACT------CCATCCTCCACAAACTTGGGGAGGGCCACAGACGCCAGGTTG 5208 Query 213504 CAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCA 213562 || || |||||||| | | | | | ||||||||||| |||||| ||||| |||||| | Sbjct 5209 CACACCGCCACCTCATCGGGCGAC-GTGTACTCCATAATCTCGCAGCACAAGTTGCTTGA 5267 Query 213563 TCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCAT 213622 ||||| ||||| |||||||| ||||| ||||| |||||| | |||||||| ||||| Sbjct 5268 GCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCAT 5327 Query 213623 GTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTT 213682 | | || || ||||| | ||| | |||| || | ||| || | | ||| || Sbjct 5328 GAACGGCACGCCTGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCGTT 5387 Query 213683 GACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTC 213742 || | | | | ||| | | |||||||| ||||| ||| | ||| || Sbjct 5388 GATCGTCTTGCGCGCGCGTCCCTCCTT---CTCGTACTTCTCGTACAGCGTCTCGAACTC 5444 Query 213743 GTGGCCCCAGACCCTGTCCAGTCC--CGGACAGGATGCGGGACACATGAGGCTCCA-GTC 213799 || ||||||| | || ||||| || | | | ||| || | |||||||| | Sbjct 5445 GTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCGTT--GGGGCAGAACAGGCTCCACTTG 5502 Query 213800 CCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTC 213859 || || ||| || | || ||||||||| || ||||||||||| ||| |||| ||| Sbjct 5503 CCATTCGCCTC-CACGCGCTTCATGAACAGATCGGGGACCCACAGAGCGTAAAACAAGTC 5561 Query 213860 CCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGAT 213916 | | | | ||||| || | || || || ||||| || || || || || | Sbjct 5562 GCGCGCGCGGTGCAGCTCGT-TAC-CGTGA-TTCTTACGCAGCTCCAGGAACTCGAACAC 5618 Query 213917 GTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTG 213973 ||| |||||||||||||||| ||||||||| || | || | |||| |||||||| Sbjct 5619 GTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGATCCTTTGCGCTTGCCTCCGCCCTG 5678 Query 213974 GTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTG 214033 |||||| | ||| |||||||| | ||| | ||| | | ||||||||| Sbjct 5679 GTCCACATAGCGAGCCGTGTCGTTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATGA 5738 Query 214034 TCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTAT 214093 |||||| || || || || | | ||| | | |||| ||| | || || Sbjct 5739 TCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTAATGCCAAT 5798 Query 214094 GCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCAT 214153 || ||||| |||||||||| ||||| || | | || || ||||| | || Sbjct 5799 ACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAAT 5858 Query 214154 GCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGA 214213 ||| || | | ||||| |||||| ||| ||||| || | | || ||| | Sbjct 5859 CGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGTGCCGGC 5918 Query 214214 GTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTC 214273 ||| || |||||||| | || || | | ||| | | || | |||| ||| || | Sbjct 5919 GTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGACATGAGCTCGTACGTGTG 5978 Query 214274 CAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGCT 214332 ||| | | ||||||| ||||||||||| || || ||| | ||| | ||| |||| Sbjct 5979 CAGTGCCGCCTGGATGTCTTGCTTGTGGATACCCAGCGC-CACGCGCATGATCATCTGCT 6037 Query 214333 GGGGCCTCTCTATGGGTCCTTTGGGGCCCTT------GAGCAGGTAGGAGCGCTCCAGAG 214386 |||| | ||| | | |||| ||| || || |||||| ||||| || | Sbjct 6038 GGGGGCGCTCCA--CGACCTT----GCCGTTCACGCGGAAGAGGTAGCCCCGCTCGAGCG 6091 Query 214387 TCTTGAACCCAAAGTAGGAGTAGGTATGATCGTTCC---CGTGTATGAGGGCAGCGTCCA 214443 | ||||| || |||||| ||| | | || || |||| |||| ||| | || || Sbjct 6092 TTTTGAAGCCGAAGTAGTCGTA---CTCAAAGTCCCGGTCGTGGATGATGGCCGAGTTCA 6148 Query 214444 GCTCTTCCGCGTGCT 214458 |||| ||| ||||| Sbjct 6149 GCTCGTCCTTGTGCT 6163 >seq391 Length=25901 Score = 284 bits (314), Expect = 2e-71 Identities = 566/835 (68%), Gaps = 5/835 (1%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | |||||||||||||| ||||| |||| | |||||| | ||||| Sbjct 432 GTACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCAT 491 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| ||| || | | | | |||| | | || |||| | Sbjct 492 CCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACGCACCCAGCGAGTACAACAGGCG 551 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||||| ||||||| | ||||||||| || || ||| Sbjct 552 GTCGGCCACGAACTCGATGTATTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCAC 611 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 ||| | | | | | ||||| | ||| ||| ||| || || | ||| ||| | Sbjct 612 GGGGAGGGAATCACTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGTG 671 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| ||| | | ||||| || ||| | || | | ||| || ||||| Sbjct 672 CACGCGGCTCTCCGGCAGCTTGTTCACCAA---CTTCGAGTACATGAGGCACGCGAAGTC 728 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| ||| |||||||||||||||||| |||| ||||||| ||||||||||||| Sbjct 729 CGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAG 788 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || |||||||||||| || | ||| ||||| |||||||| ||||||||||| Sbjct 789 GCCGCGCTTTTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCAC 848 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGGAAA 48320 || |||||||| || | ||| | | || | | | | | | | ||| | Sbjct 849 GGCAGCGAACGCCAGCAGGCGCTCCGGGTAGGACGACACGCGAGGGTCACA-CCACTTGA 907 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCT 48380 |||||||| |||||||||| | ||| || |||||||| ||||| || | || | | Sbjct 908 GCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCAGGTGAT 967 Query 48381 TGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCA 48440 ||| | |||||| | || || || |||| | ||||| ||| ||||| | Sbjct 968 CCTTCTCCACGGCGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGA 1027 Query 48441 CATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTG 48500 ||||| |||||||||||||| ||||||||| | ||||| ||||||||| || Sbjct 1028 TGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACCTCAT 1087 Query 48501 TGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAA 48560 || ||| || | ||| ||||| || || || || || ||||| ||||| || | Sbjct 1088 TGCTGAAGTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAACGCCA 1147 Query 48561 GGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTT 48620 | || || || | ||| || |||||||||| ||| || |||| ||| | ||| | Sbjct 1148 GCACGTGCTTGATGAAGTGACGCTCGTTGTCGGTCAGGTTCCCCCAGTCCTTCAGGTCGT 1207 Query 48621 TGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 ||||||||| || || | |||||||| ||||| || || |||||||| Sbjct 1208 GCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACAT 1262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931468279709440