Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq391 230 4e-55 >seq391 Length=25901 Score = 230 bits (254), Expect = 4e-55 Identities = 561/848 (66%), Gaps = 21/848 (2%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | || |||||| ||||| ||| | || |||| Sbjct 1268 TGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTG 1209 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| || | | |||| || || | |||||| || || ||||| ||||| Sbjct 1208 CACGACCTGAAGGACTGGGGGAACCTGACCGACAACGAGCGTCACTTCATCAAGCACGTG 1149 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-GAGATTCAC 25658 |||| ||||| || ||| || || || ||||||||||| ||| |||| || |||| Sbjct 1148 CTGGCGTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTG-GCGATGAACTTCAG 1090 Query 25659 CAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAA 25718 || || |||||| |||||| || |||||||| |||||||| || ||||| || Sbjct 1089 CAATGAGGTGCAGGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCTATCGAGAA 1030 Query 25719 TGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCCGA 25775 | ||||| |||||||| | ||| ||||| || ||||| | |||| || || Sbjct 1029 CATCCACTCGGAGGTGTA---CTCGCTGCTGATCGACACATACATCAAGGACGCCGTGGA 973 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 || |||| ||| | ||||||||||| || || || | ||| |||||| || || Sbjct 972 GAAGGATCACCTGCTGCGTGCCATCGAGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTG 913 Query 25836 GGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGC---GAGCGGCTGGTAGCCTT 25892 ||| | |||||| | || ||| ||| | ||||| ||| | || || Sbjct 912 GGCGCTCAAGTGGTGTGA---CCCTCGCGTGTCGTCCTACCCGGAGCGCCTGCTGGCGTT 856 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGC 25951 ||||| ||||||||||| || ||| || || || ||| |||||||||||||||| Sbjct 855 CGCTGCCGTGGAGGGCATTTTCTTCTCGGGCTCCTTCTGC-TCCATCTTCTGGCTCAAAA 797 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || || |||||| || ||| ||| || ||||||||||||||| |||||||||| Sbjct 796 AGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCA 737 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG 26071 | |||| || || || ||||| | ||| || | ||| | || || || | || Sbjct 736 TGCACACGGACTTCGCGTGCCTCATGTACTCG---AAGTTGGTGAAC-AAGCTGCCGGAG 681 Query 26072 AGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNN 26130 || | ||| || ||| | || ||||||| ||| ||| | ||||| Sbjct 680 AGCCGCGTGCACGCGATCGTGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGTGAT 621 Query 26131 NNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTAT 26190 | ||||||||| |||||| |||||||||| |||| Sbjct 620 TCCCTCCCCGTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAATACATCGAGTTC 561 Query 26191 GTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCG 26250 |||||||||| ||| ||| | |||||| ||| |||||| | |||||| Sbjct 560 GTGGCCGACCGCCTGTTGTACTCGCTGGGTGCGTCCAAGATCTACAACGTGAAGAACCCG 501 Query 26251 TTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTC 26310 ||||||| ||||| | || ||| | | || ||||||||||||||||| ||| | || Sbjct 500 TTCGACTGGATGGACATGATCTCGCTACAGGGCAAGACCAACTTCTTTGAGAAGCGCGTG 441 Query 26311 GGCGACTA 26318 ||||| || Sbjct 440 GGCGAGTA 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928780465887040