Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq556 349 5e-91 seq138 134 2e-26 seq33 125 9e-24 seq369 120 4e-22 seq738 118 1e-21 seq702 113 6e-20 >seq556 Length=20046 Score = 349 bits (386), Expect = 5e-91 Identities = 1039/1586 (66%), Gaps = 30/1586 (2%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 || ||||| | || || || ||||| || || || || ||||| || || ||||| ||| Sbjct 6339 GGCATCGACCTGGGCACGACCTACTCGTGCGTGGGCGTGTGGCAGAACGACCGTGTGGAG 6280 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || || |||| ||||| || ||||| || || || || || || || || || | | Sbjct 6279 ATCATTGCGAACGACCAGGGCAACCGCACGACACCGTCCTATGTGGCGTTCACGGGCACG 6220 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || ||||| | || |||||||| || || || || |||||| | ||| || || Sbjct 6219 GAGCGTCTGATCGGTGATGCCGCCAAGAACCAAGTGGCCATGAACGCGCACAACACGGTG 6160 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 ||||||| |||||| | || || || ||||| | ||| |||| || || || Sbjct 6159 TTTGACGTCAAGCGTTTGATCGGGCGTAAGTTCACCGATCCTGAAGTGCAGTCGGACATC 6100 Query 195545 AAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAA 195604 ||| ||||| | | |||| | || || || ||||||| | | || || | Sbjct 6099 AAGCACTGGCCGTTCAAAGTGGCTCGAGGGCCGGAGAATAAGCCGGA-AGTGGTGGTGCA 6041 Query 195605 TTTCACGGTGAGAAGAA----ACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGAT 195660 |||| | | ||||| ||| || ||||| || || ||||| |||||| || | Sbjct 6040 GTTCAAAG--ACAAGAAGGTGACA-TTCCAGCCCGAGGAGATCTCGTCCATGGTGCTGGT 5984 Query 195661 TAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGAC 195720 |||||| |||| ||||| | | ||| ||||| ||||| | ||||| ||||| Sbjct 5983 CAAGATGCGCGAGATCGCGGAGGCCTACATTGGTAAGCAGGTGAAGAACGCAGTGGTGAC 5924 Query 195721 TGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGC 195780 || || || ||||||| || ||||| || |||||||| |||||||| | || ||||| Sbjct 5923 GGTGCCGGCCTACTTCAACGACTCACAGCGGCAGGCGACCAAGGACGCCGGAGCCATTGC 5864 Query 195781 GGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || || ||| || | |||||||| || || || || ||||||||||| || ||||| Sbjct 5863 CGGCCTGAACGTGCTGCGTATTATCAACGAGCCCACGGCCGCTGCAATTGCGTACGGTCT 5804 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 ||||||| |||| | ||| | || || |||||||| || || || || || ||||| Sbjct 5803 GGACAAG---AAGGGTGGAGAGCACAACGTGTTGATCTTCGACCTGGGCGGAGGAACGTT 5747 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 ||| ||||| || |||| |||||||| ||||| ||||| || ||||| || || || || Sbjct 5746 TGACGTCTCCCTCCTCACTATTGAAGAGGGTATCTTCGAGGTGAAGGCGACGGCAGGCGA 5687 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTC-CGTCATTTGTCTGATGAGT 196019 ||| ||||| || || ||||| ||||| || | || || || || | || | Sbjct 5686 TACGCATCTGGGCGGCGAAGACTTCGACAACCGCTTGGTCGAGTTCTTCGT-GCAGGAAT 5628 Query 196020 TCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGA 196079 | || ||| || || ||||| | || | | ||| | || || || | | Sbjct 5627 TTAAGCGCAAGTATCGCAAGGATATGAAGGTGAACTCGCGTGCTATGCGCCGTCTCCGTA 5568 Query 196080 CTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTG 196139 | || ||||| ||||| || || || || || | | || || | | ||||||| Sbjct 5567 CGGCGTGTGAGCGTGCTAAGCGTACACTGTCGACGTCTGCGCAGGCGTACATCGAGATTG 5508 Query 196140 ATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGT 196199 | |||||| | || || | || ||| | | || ||||| |||||||| ||||| || Sbjct 5507 ACTCGTTGCTGGATGGTGTCGATTTCAACTCGACCATTACGCGTGCACGGTTTGAGGATC 5448 Query 196200 TAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAA 196259 | ||| || ||| | ||| ||||| || || | || || || || ||| | | Sbjct 5447 TTTGTGGTGAATTCTTTCGCAAGACGATGGACCCGGTGGCGCAGGTTCTACGAGACTCGA 5388 Query 196260 AGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGA 196319 || || ||| | || | || | || || || || || || || ||||| || | Sbjct 5387 AGCTGTCCAAGAGACAAGTGAACGAGGTGGTGCTGGTCGGGGGCTCGACGCGTATCCCCA 5328 Query 196320 AGATTCAACAGATGCT-TTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAAC 196378 || |||| ||| || | || | ||| ||||| ||| || | ||| | |||||| Sbjct 5327 AGGTTCAGCAGTTGTTGATCGA-CTTTTTCAACGGTAAGGAGCTGTTCAAGTCAATCAAC 5269 Query 196379 CCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGAC 196438 ||||| ||||| || || || ||||| | || ||||| || || || || || Sbjct 5268 CCGGACGAAGCTGTCGCCTACGGTGCTACAGTGCAGGCGGCCATCCTGAGCGGCCATG-- 5211 Query 196439 AATAATAACGTCCAA-------GATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGG 196491 | | | ||||||| || || |||||||| ||||| || || | || || || Sbjct 5210 AGTCGT--CGTCCAAGTTGCAGGACCTGCTGCTACTGGATGTGGCGCCGTTGTCTCTAGG 5153 Query 196492 TCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGAC 196551 | || || || || || || ||||| || | || | ||||| || |||| | Sbjct 5152 GTTGGAGACGGCTGGCGGAGTCATGACGAAGTTGATCCCGCGCAACACGACGGTTCCAGC 5093 Query 196552 TAAGAAGGAACAAGTC-TTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAG 196610 ||||||| | |||| || || ||||| | || || ||| | || || || |||| Sbjct 5092 CAAGAAGGCGC-AGTCGTTCTCGACGTACGCGGACAACCAATCGGGGGTGTTGATCCAAG 5034 Query 196611 TATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGG-AACTTTCGATTTG 196669 | | || || || || ||| | || || ||||| || || || ||| | | Sbjct 5033 TGTTCGAGGGTGAGCGGTCCATGACCCGTGACAATCATCTTCTGGGCAAGTTTAACCTGG 4974 Query 196670 ACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGAC 196729 || || || || | || | ||||| || |||||| | || ||||| | || Sbjct 4973 AC-GGCATCCCGCCCATGCCGCGCGGTGTGCCGCAGATTGACGTGACGTTCGACGTGGAT 4915 Query 196730 GCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATT 196789 | ||||| ||| | ||||| | |||| ||| ||| | | |||||| | ||||| Sbjct 4914 GTCAATGGCATTTTGAACGTGTCGGCTGTGGAGAAGTCGACGGGCAAAGAGAACAAGATC 4855 Query 196790 GTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGAT 196849 ||| || || |||||||| || || || | || || || || ||||| | || Sbjct 4854 ACGATCACGAACGACAAGGGTCGACTGTCCCAATCCGAGATCGACCGCATGGTCGATGAC 4795 Query 196850 GCGGAAAAGTACAGGGAAGAAGACGA 196875 || || ||||||| ||| |||| || Sbjct 4794 GCCGAGAAGTACAAGGACCAAGATGA 4769 >seq138 Length=77892 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || | || || || || ||||| | || || ||| |||| Sbjct 13190 ATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACTTTGGACGTGGAGCCGTCG 13131 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | ||||| || | || || |||||||| ||||||||||| || || || ||| Sbjct 13130 GACTCGATCGACAATGTGAAGCAGAAAATTCAAGACAAGGAAGGCATCCCGCCTGACCAG 13071 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| ||||| || |||||||| || || || || || || |||||| Sbjct 13070 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 13011 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || |||||||| || || | || || ||||| Sbjct 13010 ATCCAGAAGGAGTCAACGCTACACCTGGTGCTGCGTCTGCGCGGTGG 12964 Score = 132 bits (146), Expect = 6e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || | || || || || ||||| | || || ||| |||| Sbjct 12962 ATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACTTTGGACGTGGAGCCGTCG 12903 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | ||||| || | || || |||||||| ||||||||||| || || || ||| Sbjct 12902 GACTCGATCGACAATGTGAAGCAGAAAATTCAAGACAAGGAAGGCATCCCGCCTGACCAG 12843 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| ||||| || |||||||| || || || || || || |||||| Sbjct 12842 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 12783 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || |||||||| || || | || || || ||| Sbjct 12782 ATCCAGAAGGAGTCAACGCTACACCTGGTGCTGCGTCTACGTGGCGGT 12735 >seq33 Length=70540 Score = 125 bits (138), Expect = 9e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || | || || || || ||||| || || || ||| | || Sbjct 19362 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCTTCG 19303 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | ||||| ||| | || || || ||||| ||||||||||| || || || ||| Sbjct 19302 GACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 19243 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || || || || ||||| || || || || || || || |||||| Sbjct 19242 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 19183 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || ||||| || || | ||||| ||||| Sbjct 19182 ATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGTCTTCGCGGTGG 19136 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || | || || || || ||||| || || || ||| | || Sbjct 19590 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCTTCG 19531 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | ||||| ||| | || || || ||||| ||||||||||| || || || ||| Sbjct 19530 GACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 19471 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || || || || ||||| || || || || || || || |||||| Sbjct 19470 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 19411 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || ||||| || || | || || ||||| Sbjct 19410 ATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGCGTGGTGG 19364 >seq369 Length=26862 Score = 120 bits (132), Expect = 4e-22 Identities = 296/442 (67%), Gaps = 9/442 (2%) Strand=Plus/Minus Query 78044 TTTATTCACGCAACACCTACTTTGTTTAATGCAGGTACTCCCCGTCCACAGATGTCATCT 78103 |||| ||||| || || || | ||||| || || || || ||||| ||| |||| || Sbjct 5948 TTTACGCACGCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCG 5889 Query 78104 TGTTTCCTACTTGCAAATAAGGAGGACTCTATTAATGGTATATACGGGACTCTCACAGAG 78163 || ||||| || || | |||| ||||| ||| | || || |||| || |||| || Sbjct 5888 TGCTTCCTGCTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAG 5829 Query 78164 TGTGCTCAGATTTCTAAGTGGGCTGGTGGTATAGGTCTTCATATTCACGATGTTCGTGCA 78223 || || || || |||||||| || ||||| || || ||| ||| | | || || Sbjct 5828 TGCGCGTGCATCTCCAAGTGGGCCGGAGGTATTGGCATTAGTATGCACAACATCCGCGCC 5769 Query 78224 AACAAGTCCAGGATTAGAGGAACTAATGG-TCAGTCTGATGGAATTATTCCTATGCTTAG 78282 | || | || | || || || || ||| || | || || || || ||||| || Sbjct 5768 ACGAACAGCTACATCCGCGGCACGAACGGATCA-TCCAACGGGATCATCCCCATGCTGAG 5710 Query 78283 GGTATTCAATGCTACAGCACGCTATGTCAACCAAGCGGGTCGTAGG---AAGGGGTCATT 78339 ||| ||||| | || || |||||||| |||| | || | | | || || || || Sbjct 5709 GGTCTTCAACGACACGGCTCGCTATGTGGACCAGGGCGGAGGCAAGCGCAAAGGATCGTT 5650 Query 78340 CGCTATGTACCTTGAACCTTGGCACGCCGATGTAATGGATTTTTTGGAACTTCGTCTCAA 78399 ||| || ||||| || || ||||||||||| || | || || |||| || ||| || Sbjct 5649 CGCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGTAAGAA 5590 Query 78400 CCAGGGTGACGAG--GAAGCTCGATGCAGGGATTTATTCACTGCTATGTGGATTCCGGAT 78457 || ||| ||||| | | | || || | || || || ||| ||||| | || ||| Sbjct 5589 TCACGGTAACGAGCTGCACCGCG-CGC-GCGACTTGTTTTACGCTCTGTGGGTCCCCGAT 5532 Query 78458 CTTTTTATGAAGAGAGTTGAGG 78479 || || |||||| | || |||| Sbjct 5531 CTGTTCATGAAGCGCGTGGAGG 5510 >seq738 Length=22000 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || ||||| || ||||| || || || ||| | || Sbjct 12112 ATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCATCACGCTGGACGTGGAGCCATCC 12171 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||| || || || |||| || || || || ||||||||||| || || || ||| Sbjct 12172 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 12231 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || ||||| || ||||| || || || || || ||| | || |||||| Sbjct 12232 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 12291 Query 172042 GTTCAAAAGG 172051 | || |||| Sbjct 12292 ATCCAGAAGG 12301 >seq702 Length=16857 Score = 113 bits (124), Expect = 6e-20 Identities = 206/298 (69%), Gaps = 13/298 (4%) Strand=Plus/Plus Query 198660 TTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCA 198719 |||||||| |||||||||||||| ||| | ||| || || || || || || | || Sbjct 13551 TTCATCGAAATGTTCGTTGGTGTGGGTCCGTCGCGTGTACGTGATCTGTTCAAGGAGGCT 13610 Query 198720 CGTGAAAATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTG-----GTAAGA 198774 || | || ||||| || | ||||| ||||| ||||| ||||| | | || Sbjct 13611 CGCGCGAACGCTCCATGCATTGTGTTCATCGATGAAATTGATGCTGTGGCCCGTGCGCGA 13670 Query 198775 AGCGTGGTGGAACTACTACACCTGGTAATGATGAGCGTGAGCAGACGATTAACCAGCTTC 198834 ||| || | |||| || | || || || |||||||| | ||| |||||||||| | Sbjct 13671 AGCAAGG-GCAACTTCT-CTGGCGGCAACGACGAGCGTGAAAACACGCTTAACCAGCTGC 13728 Query 198835 TCACTGAGATGGATGGTTTTGAC---AATGAGACTGGTATCGTGGTGATTGCTGCTACAA 198891 | |||||||||||||| || | |||| ||| | |||||| |||||| ||| | Sbjct 13729 TGGTGGAGATGGATGGTTTCAACTCGAGTGAG---GGTGTGGTGGTGCTTGCTGGTACGA 13785 Query 198892 ATAGGATTGATATCCTAGATGATGCACTGCTTCGTCCCGGTCGATTCGACCGTAAGAT 198949 | | ||||| || || | || | || |||||||||||||||||||| |||| Sbjct 13786 ACCGCGCCGATATTCTTGACAAGGCTATCCTGCGTCCCGGTCGATTCGACCGGCAGAT 13843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657816834805520