Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_021311.1 Length=76479 Score E Sequences producing significant alignments: (Bits) Value seq805 138 6e-28 >seq805 Length=27256 Score = 138 bits (152), Expect = 6e-28 Identities = 330/497 (66%), Gaps = 9/497 (2%) Strand=Plus/Minus Query 66831 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66890 |||| |||||| ||||||||| || | || | | ||||||||||| || ||||| ||| Sbjct 5495 GCCTTCATCGATGCTGAGCACGCCATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 5436 Query 66891 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66950 | ||| || || ||||||||| | ||||| | || ||||| |||| ||| Sbjct 5435 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCGCTGGAAATCGCGGAC 5376 Query 66951 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 67010 ||| || ||||| | | || | |||| || | ||| ||||||||| || ||| Sbjct 5375 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 5316 Query 67011 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 67070 || || |||||||| || || || || || ||| || | | ||||| ||||| || Sbjct 5315 CCACGTGCCGAGCTTGAGGGTGAAATGGGAGACCAGCAGATTGCGCTGCAGGCGCGACTG 5256 Query 67071 ATGTCACAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 67127 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 5255 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 5198 Query 67128 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACC 67187 ||| | |||||| | ||| ||||| | |||| | || ||| | |||| | Sbjct 5197 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 5142 Query 67188 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 67247 || |||| || | || ||| | | ||||| || || ||| | || | || |||| Sbjct 5141 ACGTCGGGTGGTACAGCGTTGCGTTATTACGCGTCTGTGCGCCTTGACATTCGCCGCAAG 5082 Query 67248 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 67307 | | |||||||| || || |||||||||| || |||||||| | |||| Sbjct 5081 ACGGCTATCAAGGAAGGTGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 5022 Query 67308 AACAAGCTGGCCCCGCC 67324 ||||||||||| |||| Sbjct 5021 AACAAGCTGGCATCGCC 5005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244591481392440