Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1414 140 1e-27 seq445 98.7 3e-15 >seq1414 Length=7664 Score = 140 bits (154), Expect = 1e-27 Identities = 199/277 (72%), Gaps = 10/277 (4%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || |||||||||||||| ||| || || || ||||| |||||||| || || ||||| Sbjct 2972 CGGCGCTGAATATAACCCGTTTCAGCAGTCTTCACAGCCGTATCAATCAGTCCTTCACGA 2913 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 |||||||| || |||||||| | ||||| || |||||| | | ||| | || Sbjct 2912 CCACCCATGGCGTGGAAGAAAAACTCTTGGGGGGTGAGCCCCTTCAGGTACGAGTTTTCT 2853 Query 302713 ACGAAACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTG 302769 ||||| ||||| |||||| | ||| || |||| |||| ||||| |||| | Sbjct 2852 ACGAACCCACGACTCTCGGGACCCAGATCATC---CTTGCCGTAGTGCGGCAGCGTCCGG 2796 Query 302770 TTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATC 302829 | | | ||||| ||||||||||| || || || |||||||| |||| || | ||| Sbjct 2795 TGGTTGAAACCGTACGGGATACGCTTGCCTTCGACATTCTGCTGACCCACACAAGCAATA 2736 Query 302830 ATCTGCGAAATATTTAAATCACTG--CCCTTGGAGCC 302864 |||||||| ||||| ||| | | ||||||||||| Sbjct 2735 ATCTGCGAGATATT--AATGAAGGAACCCTTGGAGCC 2701 >seq445 Length=23424 Score = 98.7 bits (108), Expect = 3e-15 Identities = 362/562 (64%), Gaps = 10/562 (2%) Strand=Plus/Plus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || |||| |||||| |||||||| || || | ||| | |||||| |||||||| Sbjct 7222 CCGTGAGAGATCAGACAATCGCGCTCCATCTCCCCCATACGCAAACCACCCTCGCGAGCA 7281 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || ||||| ||||| || | Sbjct 7282 CGACCCTCCATCGGCTGGCGCGTCAGCATCGTCACGGGACCACGCGAGCGCGAGTGGATC 7341 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTCGAA 251667 || || | ||||||||||| || ||||||||||| | ||| ||||| ||||| || Sbjct 7342 TTGTCGTCGACCATATGCTTCAGGCGCTGGTAGAACGTGGGTCCGATAAAGATCTGCGCT 7401 Query 251668 GGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTC--ATAAC 251725 | || | || || | || | ||||| || ||||| || | | ||| || | Sbjct 7402 GTCAGGCGACGGCCGGTGTGCCCGCTGTACATTACCTCGTTACCGT--GCTTCTGGTACC 7459 Query 251726 CAAGTTTCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACTGGTGCCGT 251785 | || || || || |||||| | || | | | | || ||| ||| Sbjct 7460 CCAGGTTGTGCAGGGTGTCGGCAATAGCTTGAACGGTCACATCCGTGAACGGCGTGGCGT 7519 Query 251786 CTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGA 251845 | || | |||| | || | |||||||||| | || ||| || || | | Sbjct 7520 CGCCTTCGTCACCCGTCTGCGACGACACTTTGCCGAGCAGACACTCGACAAGATGCCCCA 7579 Query 251846 TAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCAG 251905 |||||||| |||||||| || || || | | ||| ||||| | | || || Sbjct 7580 CCGTCATACGCGACGGAATAGCGTGAGGGTTCACAACGATATCGGGCGTGATGCCCTCCA 7639 Query 251906 CAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTTTCCAATAGTTCCCTTTTGTCCGT 251962 | || || ||||| || ||||| | || | | ||||| || ||||| ||||||| Sbjct 7640 CGGTAAATGGCATGTC---TTCCTGGCGGTACGTCATACCAATCGTACCCTTCTGTCCGT 7696 Query 251963 GACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTAC 252022 |||| || ||||| |||||||| |||| |||| | || | ||||||||| Sbjct 7697 GACGCGATGCAAACTTGTCACCAATCTGAGGAATACGAATGTTGCGGAAGCGAACCTTGG 7756 Query 252023 AGAAGTTGTAACCATCACCGTT 252044 ||| ||| |||||||| |||| Sbjct 7757 TGAACTTGAAACCATCAGCGTT 7778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471713109689317