Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq33 100 7e-16 seq138 91.5 3e-13 >seq33 Length=70540 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||| | || || || |||||||| |||| ||||| ||| ||| Sbjct 19359 CAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCTTCGGAC 19300 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| || || ||||| || ||||| || || ||| || Sbjct 19299 TCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAG 19240 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 19239 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 19180 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| |||||||| || ||||| || || | ||||| Sbjct 19179 CAGAAGGAGTCTACCCTGCACCTGGTGCTGCGTCTTCG 19142 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||| | || || || |||||||| |||| ||||| ||| ||| Sbjct 19587 CAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCTTCGGAC 19528 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| || || ||||| || ||||| || || ||| || Sbjct 19527 TCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAG 19468 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 19467 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 19408 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| || ||||| || Sbjct 19407 CAGAAGGAGTCTACCCTGCACCTGGT 19382 >seq138 Length=77892 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||||||||| ||||| || ||| | |||| || ||||| Sbjct 12938 ACGGGCAAGACGATCACTTTGGACGTGGAGCCGTCGGACTCGATCGACAATGTGAAGCAG 12879 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || |||||||| || ||||| || ||| ||| || | || || ||||| || ||| Sbjct 12878 AAAATTCAAGACAAGGAAGGCATCCCGCCTGACCAGCAGCGCCTGATTTTCGCTGGCAAG 12819 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || || || | || || ||| |||||| ||||||| ||||| || || ||| Sbjct 12818 CAGCTTGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCAACGCTACAC 12759 Query 206374 CTTGT 206378 || || Sbjct 12758 CTGGT 12754 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||||||||| ||||| || ||| | |||| || ||||| Sbjct 13166 ACGGGCAAGACGATCACTTTGGACGTGGAGCCGTCGGACTCGATCGACAATGTGAAGCAG 13107 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || |||||||| || ||||| || ||| ||| || | || || ||||| || ||| Sbjct 13106 AAAATTCAAGACAAGGAAGGCATCCCGCCTGACCAGCAGCGCCTGATTTTCGCTGGCAAG 13047 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || || || | || || ||| |||||| ||||||| ||||| || || ||| Sbjct 13046 CAGCTTGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCAACGCTACAC 12987 Query 206374 CTTGT 206378 || || Sbjct 12986 CTGGT 12982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181736897740261