Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq369 179 4e-40 seq33 100 3e-16 seq138 96.9 3e-15 >seq369 Length=26862 Score = 179 bits (198), Expect = 4e-40 Identities = 626/964 (65%), Gaps = 25/964 (3%) Strand=Plus/Plus Query 147459 GGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTT 147517 ||| | ||||||||| ||||| || ||| ||| |||| || || |||||| || || | Sbjct 5190 GGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAATCT 5248 Query 147518 CGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGC 147577 || ||||| |||||| | || || | || ||||| || || || ||| Sbjct 5249 CGCAGCACAAGTTGCTTGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGG 5308 Query 147578 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---A 147634 |||||| ||| | |||||| |||| |||| ||||| | |||| || | ||| | Sbjct 5309 CCGCGTCCTTGTACAGCATGAACGGCACGCCTGTCTCAATCTGCGCGTCCAGGATGGCGA 5368 Query 147635 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCT 147694 ||| ||| | ||| || | | || || ||| ||||| || |||||| || Sbjct 5369 ACCA---CAGCTGCTGGGCGTTGATCGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTCT 5425 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGAC 147754 |||||| | ||| ||||||||||| |||| ||| || ||||| || | || | Sbjct 5426 CGTACAGCGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCGTTGGGGC 5485 Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 | | ||| |||| || | | ||| | ||||| ||| |||||||| || ||||||| Sbjct 5486 AGAACAGGCTCCACTTGCCATTCGCCTCCACGCGCTTCATGAACAGATCGGGGACCCACA 5545 Query 147815 GCGCGTACATAAGATCGCGCGCTT--TGCAATCCTCGGCGCCCATGTTGCGTTTCAAATT 147872 | ||||| | | |||||||| |||| |||| || || | | | | | Sbjct 5546 GAGCGTAAAACAAGTCGCGCGCGCGGTGCAG--CTCGTTACCG-TGATTCTTACGCAGCT 5602 Query 147873 --AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930 | | || | | | | |||||||||||| || || | ||||| ||| | || ||||| Sbjct 5603 CCAGGAACTCGA-ACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGATCCTTTG 5661 Query 147931 CGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGT 147987 ||||| |||||||||||| |||| ||| || ||| ||| || || | || |||||| Sbjct 5662 CGCTTGCCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTGAAGACCCTCAGCATGGGG 5721 Query 147988 TCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG 148047 | ||| | | | ||||| ||| ||| | |||| ||| || | | | Sbjct 5722 ATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTG 5781 Query 148048 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA---T 148104 |||| ||| |||||| || ||| | |||| || ||| ||||| | || | | Sbjct 5782 TGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGT 5840 Query 148105 GTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATT 148164 ||| ||| ||||| || || ||||| | | | | |||| || ||||| ||| Sbjct 5841 GTC--GTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGC 5898 Query 148165 TGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGA 148224 |||||| | |||| || || || || ||||| ||||||||||||| || | || Sbjct 5899 TGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGT 5958 Query 148225 CTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCG 148284 ||| | ||||| | | || | | |||||| | ||| || |||||||| Sbjct 5959 GACATGAGCTCGTACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGGATACCCAGCGCC 6018 Query 148285 ACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATAT 148344 |||||||||| ||| ||||| || || || | || | ||| | || || || Sbjct 6019 ACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTGCCGTTCACGCGGAAGAGGTAG 6078 Query 148345 CCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATG 148404 || ||||| |||||| | || ||||| | ||| ||||| || | |||| |||| Sbjct 6079 CCCCGCTCGAGCGTTTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATG 6138 Query 148405 GCCG 148408 |||| Sbjct 6139 GCCG 6142 >seq33 Length=70540 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||| || | | | ||||| || || |||||||||||||||| || Sbjct 19369 ACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 19428 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| | |||||| || || ||||| ||||| Sbjct 19429 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCC 19488 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||||| || |||| | || | | || | |||||||| || | Sbjct 19489 TTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAG 19548 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||| || || |||| || || | || ||||||||| Sbjct 19549 CGTGATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 19591 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | ||||| || || |||||||||||||||| || || Sbjct 19148 CGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 19207 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| | |||||| || || ||||| |||||||| || Sbjct 19208 TCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTG 19267 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || |||| | || | | || | |||||||| || | ||| | | Sbjct 19268 TCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATC 19327 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || |||| || || | || ||||||||| Sbjct 19328 GTCTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 19363 >seq138 Length=77892 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| |||| ||||||| || || |||||||||||||||| || || Sbjct 12748 CGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 12807 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || || | | || || ||||| || || || || |||||||| || Sbjct 12808 TCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 12867 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || |||| | || | | || | ||||||||| || | || | | Sbjct 12868 TCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAAGTGATC 12927 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || |||| ||| || | ||| ||||||||| Sbjct 12928 GTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 12963 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| |||| |||| ||||||| || || |||||||||||||||| || Sbjct 12970 CGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 13029 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| || || | | || || ||||| || || || || |||||| Sbjct 13030 CGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCT 13089 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || |||||| || |||| | || | | || | ||||||||| || | Sbjct 13090 TCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAA 13149 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || |||| ||| || | ||| |||||||| Sbjct 13150 GTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 13190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476578188716760