Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq382 244 1e-59 >seq382 Length=26401 Score = 244 bits (270), Expect = 1e-59 Identities = 467/678 (69%), Gaps = 20/678 (3%) Strand=Plus/Plus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967 ||||| ||| || ||||| |||||||| || || || |||||||| || | ||| Sbjct 6098 AGCTGCTTTTGAAGAGGCTCAACGTGGTTCAGATACACATGCGCGTCACCGATAACGTGA 6157 Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAG-GTGAGCAGCGAGTA 147026 | ||| || || || || || || | ||| || ||||| | || | ||||||| || ||| Sbjct 6158 ATAAATTCACCAGGTTTCAGCCCTGCCACTTGTGCCACTA-GTCGCGTGAGCAACGCGTA 6216 Query 147027 GCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 ||| || ||||| || || || || |||||||| || |||| | |||||||| ||| || Sbjct 6217 GCTTGCAATGTTAAACGGCACACCAAGGCCCATATCGGCCGAGCGCTGGTACATCTGACA 6276 Query 147087 CGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||| | || ||||| |||||||| |||||||| | ||||| ||||||||||| ||||| Sbjct 6277 CGACAATTCGCCGTCCGCCACGTAGAACTGGCAGAACATGTGACACGGCGGCAGTGCCAT 6336 Query 147147 GGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCT 147206 | ||| || || |||||||| || || | ||| | ||| | | | |||||| | Sbjct 6337 CTCATTCAGATCAGCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCATCGGGTTCGT 6396 Query 147207 CTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCC 147266 | || | || ||| | ||||||||||| ||||| || ||| | || | Sbjct 6397 ACGCAGCTTATGAATCACCTCAGTAAGCTGGTCCACTCCCTGTCCAGTGTAATCTG-CGT 6455 Query 147267 GCA-GTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGT 147325 ||| |||| |||| |||| ||||| || | ||||||||||||||| || || || || | Sbjct 6456 GCATGTCCGTGTACTTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACCGGTCCGAGAT 6515 Query 147326 CGCCGGGCTTTCTGTGCGAG-----AAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTG 147380 | || | || ||| | || || | | ||| |||| ||||||| | Sbjct 6516 CACC-----TACTTCGCGCGTCTGCAATCCTCGGCTATCCAGATACTCCCGGGACCCATT 6570 Query 147381 GGCGTCCCAGATGCCCA-CTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGA 147439 ||||||||||| | ||| | || | ||| | | | |||| ||| | || Sbjct 6571 CCCGTCCCAGATGTGAATGTCCTTCTGCTG-CAGCGTGTGCGCGCTCGTGTCGCCGCTGA 6629 Query 147440 TGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGG 147499 | ||||| |||||||||||| || || | ||| || || | |||||| || ||||| | Sbjct 6630 TAAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCG 6689 Query 147500 GGAAC---TGGTCCCTCAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCG 147556 ||||| | || ||||| | ||| ||| | |||||||| |||| |||||| | Sbjct 6690 GGAACACGTTTTCTCTCAGACTGAAGCTCATCTGCGCTCCAAACACCGACAACGTGCCAG 6749 Query 147557 TGCCCGTCCTGTCCTCCC 147574 ||||||| | || ||||| Sbjct 6750 TGCCCGTGCGGT-CTCCC 6766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583447586162400