Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq138 167 2e-36 seq33 143 3e-29 seq369 138 1e-27 seq738 113 5e-20 seq41 86.0 6e-12 >seq138 Length=77892 Score = 167 bits (184), Expect = 2e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||||||||| || ||||| || ||||||||||||| | ||| || Sbjct 12973 AGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGA 13032 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || ||||||| |||||||| || ||||| |||||||| Sbjct 13033 CCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCC 13092 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||||||||| || || || ||| | | ||| |||| |||||||| | ||| Sbjct 13093 TTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAAGTG 13152 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || ||||| || ||||| || ||||| ||| Sbjct 13153 ATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTTG 13194 Score = 163 bits (180), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||||||||| || ||||| || ||||||||||||| | ||| || Sbjct 12745 AGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGA 12804 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || ||||||| |||||||| || ||||| |||||||| Sbjct 12805 CCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCC 12864 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||||||||| || || || ||| | | ||| |||| |||||||| | ||| Sbjct 12865 TTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAAGTG 12924 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || ||||| || ||||| Sbjct 12925 ATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 12962 >seq33 Length=70540 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || ||||||||||||| | ||| || Sbjct 19373 AGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGA 19432 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||||||||||||| || || || |||||||| Sbjct 19433 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCCTTCC 19492 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| ||||| || || || ||| | | ||| || | |||||||| || || Sbjct 19493 TTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTG 19552 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGT 134724 || || || || || || || || || || || ||||| || || |||| Sbjct 19553 ATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCATGTTCTTCTTGT 19601 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || |||| ||| ||||| || || || ||||| || |||||||||||| Sbjct 19133 TTTCCACCGCGAAGACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCG 19192 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| || ||| || ||||| ||||| || || |||||||||||||| || || Sbjct 19193 CTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGA 19252 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || ||||| ||||| || || || ||| | | ||| || | ||| Sbjct 19253 GGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCC 19312 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || || || || || || || || ||||| Sbjct 19313 ACGTCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 19362 >seq369 Length=26862 Score = 138 bits (152), Expect = 1e-27 Identities = 350/527 (66%), Gaps = 9/527 (2%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | ||||||||||| |||| || ||| ||||||| | || || || Sbjct 6038 CAGCAGATGATCATGCGCGTGGCGCTGGGTATCCACAAGCAAGACATCCAGGCGGCACTG 5979 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 | |||||| | | ||||| || ||||||||||| ||||||| | ||| | Sbjct 5978 CACACGTACGAGCTCATGTCACAGATGTTCTTTACGCACGCGACGCCCACGCTCTTTAAC 5919 Query 7684 GCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || ||||| |||| || || |||| ||||| || |||| |||||| || ||| Sbjct 5918 GCCGGCAC-GCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTGGCCATGCAGGACGACTC 5860 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 || || ||||||||| ||||||| | ||||| || ||||| | | ||| || Sbjct 5859 GATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCCGGAGG 5800 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || || | | | || || | ||||||| ||| |||| ||| ||||| Sbjct 5799 TATTGGCATTAGTATGCACAACATCCGCGCCACGAACAGCTACATCCGCGGCACGAACGG 5740 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 | | ||| ||| | |||||| || | || ||||| || ||| || |||| || Sbjct 5739 ATCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAACGACACGGCTCGCTATGTGGA 5680 Query 7923 CCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| ||| ||||||||||| | |||||||| |||||||||||||||| || Sbjct 5679 CCAGGGCGGAGGCAAGCGCAAAGGATCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGA 5620 Query 7980 CATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCA--AAGCGCGC 8037 | | | || | || | |||||| || ||| ||| | ||| |||||| Sbjct 5619 CGTGTTCGAGTTCCTGGAGCTGCGTAAGAATCACGGTAACGA--GCTGCACCGCGCGCGC 5562 Query 8038 GATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084 || | || | || ||||||| ||||||||||| |||| |||||| Sbjct 5561 GACTTGTTTTACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGCGT 5515 >seq738 Length=22000 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | ||| | ||| |||||||| ||||| || || | Sbjct 12301 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 12242 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || ||||| |||||||| || || || ||||| || ||||| || Sbjct 12241 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 12182 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| ||||||| | |||||||| || || ||||| || || || | || || || Sbjct 12181 -CAATGCTGTCGGATGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACA 12123 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 12122 AAGATCTGCAT 12112 >seq41 Length=66094 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||| |||||| || ||||||||||| || ||| | Sbjct 28260 AGACGCAGCACCAGGTGCAGCGTGCTTTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 28201 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| || || |||| ||||||||| || ||||| || ||| Sbjct 28200 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCT 28144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505363394843320