Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq369 188 9e-43 seq391 107 2e-18 seq97 86.0 8e-12 >seq369 Length=26862 Score = 188 bits (208), Expect = 9e-43 Identities = 737/1141 (65%), Gaps = 37/1141 (3%) Strand=Plus/Plus Query 111044 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 111103 |||||| ||||||||||||| || ||||| | ||||| || | ||| ||||| || ||| Sbjct 5005 ATAAATGCATCCGCGAGACCCTGGACACCAATACCAACCGGGCGGTGGCGCATGTTGGAC 5064 Query 111104 TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 111163 || || || ||| ||||| || | || |||||||| || | || ||| Sbjct 5065 TTGCGTGCCTCCTCGACGGGGTAGTAGTTGACATCAATGACCTTATTCAAGTTCCGGGTC 5124 Query 111164 ACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 111223 || | ||| || | || | || || | || | || | || | || | ||| Sbjct 5125 ACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACA 5178 Query 111224 TACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 111283 |||| || ||||| | || |||| ||||| || ||| |||||| |||||| Sbjct 5179 AACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTAC 5238 Query 111284 TCTAAAATTTCTGTACATAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340 || | ||| || || |||||| || | ||||| || | |||| ||||| Sbjct 5239 TCCATAATCTCGCAGCACAAGTTGCTTGAGCGG---ATCGTGCCGAGGTTCTGCTGGTTC 5295 Query 111341 CTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAT 111400 ||| |||| ||| |||||||| |||||| | ||| || ||||| |||| | Sbjct 5296 GACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCTGTCTCAATCTGCGCG 5355 Query 111401 TTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCC 111457 | || || || ||| || | || | || | | | ||| || ||||||||| Sbjct 5356 TCCAGGATGGCGAACCA--CAGCTGCTGGGCGTTGATCGTC-TTGCGCGCGCGTCCCTCC 5412 Query 111458 GCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGG 111516 ||||||||| ||| || | || ||||| || ||| | || ||| |||| || || Sbjct 5413 TTCTCGTACTTCTCGTACAGCGTCTCGAACTCGTCGCCC-CAGCACTCGTAGAGTCCGGG 5471 Query 111517 TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAG 111576 |||| || || ||||| || ||| | ||| |||| || ||||||||||| || Sbjct 5472 GGCCTCGTTGGGGCAGAACAGGCTCCACTTGCCATTCGCCTCCACGCGCTTCATGAACAG 5531 Query 111577 GTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGT 111635 || || | |||||| | |||| | || | | | | || | |||| ||| || | Sbjct 5532 ATCGGGGACCCACAGAGCGTAAAACAAGTCGCGCGCGCGGTGCAGC-TCGTTACCGTGAT 5590 Query 111636 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 | || | ||| |||||||| | | || |||||||| ||||| || |||| |||| Sbjct 5591 TCTTACGCAGCTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGA 5650 Query 111696 TAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 111752 ||||| || || | || | || | |||||||| || ||| |||| || || | Sbjct 5651 ACGATCCTTTGCGCTTGCCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTGAAGACCC 5710 Query 111753 GAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTG 111811 ||||| || || || || | ||| || || || || || || || | || || Sbjct 5711 TCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGAT-GTAGCTGTTCGTG 5769 Query 111812 GCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 111871 || | | | || || || |||||||| || |||||||| ||||| ||| ||| Sbjct 5770 GCGCGGATGTTGTGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCAC 5829 Query 111872 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 111931 | | | || || | || || || | || ||||| |||| |||| | |||||||| Sbjct 5830 TGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAGCAC 5889 Query 111932 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG---AATG 111988 |||| |||||| | || || || || || ||||| || || || ||||| || | Sbjct 5890 GACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAG 5949 Query 111989 AACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGG 112048 ||||| || ||||| ||||| || | || | | | ||||||| | |||| Sbjct 5950 AACAT---CTGTGACATGAGCTCGTACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGG 6006 Query 112049 ATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGC 112108 || || | || || ||||||| ||| | ||| ||| |||| || |||| | | Sbjct 6007 ATACCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTGCCGTTCA-- 6064 Query 112109 CGTTGAAGA--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || ||||| |||| | ||| || ||||||| || ||||| | | ||| |||||| Sbjct 6065 CGCGGAAGAGGTAGCCCCGCTCGAGCGTTTTGAAGCCGAAGTAGTCGTACTCAAAGTCCC 6124 Query 112167 G 112167 | Sbjct 6125 G 6125 >seq391 Length=25901 Score = 107 bits (118), Expect = 2e-18 Identities = 348/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || ||||||||||||||||||||||| || | || || | ||||| Sbjct 433 TACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCATC 492 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGAC 122488 |||| || || |||||| |||| | || || |||||| | | || | || | Sbjct 493 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACGCACCC-AGCGAGTACAAC-AGGC 550 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 | || | ||| |||| ||||| | | |||| | |||||||||| ||||| || | Sbjct 551 GGTCGGCCACGAACTCGATGTATTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 610 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| | || | |||| | | ||||||| | || || || |||||| |||| Sbjct 611 CGGGGAGGGAATCACTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 670 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAA 122663 | | | ||| || || | || ||| || | | | | |||| | || Sbjct 671 GCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAA 725 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 ||| ||| | ||||| || ||| || || || || ||||||| ||||| ||||| Sbjct 726 GTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 785 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 ||| || ||||| || | ||| | || | |||||| || || |||||||| || ||||| Sbjct 786 GAGGCCGCGCTTTTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTC 845 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTT-GCATCAAACCATT 122842 ||| || ||||| | ||||| || | | |||| ||| || | ||| |||| | Sbjct 846 CACGGCAGCGAACGCCAGCAGGCGCTCCGGGTAGGA-CGACACGCGAGGGTCACACCACT 904 Query 122843 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 | | ||||| ||||||||||| | || || | || | |||||| Sbjct 905 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 953 >seq97 Length=51161 Score = 86.0 bits (94), Expect = 8e-12 Identities = 215/321 (67%), Gaps = 17/321 (5%) Strand=Plus/Minus Query 182487 GGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATCATTATCG 182546 |||||||| ||||| || || | || ||||||||||||||| || || |||| || Sbjct 37973 GGCCAGAATGTGTGGAACAGGTTGAAGAGGAGACCCTTGATGTGCGAGCCGTCATGGTCC 37914 Query 182547 GCATCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAA------CATC---TTGG 182597 ||||||||| || | ||| ||||| || |||| | | || | | Sbjct 37913 TGATCTGTCATGGCAATCACACGCCCATAACGCAGTTTTTGACGTGCCTCCTCCGTTCCG 37854 Query 182598 TAGT-CTTTTCCTTGTTGAAGACCAAGGATCTTCTTGAGATCATTGAACTCCTGG---TT 182653 |||| || ||| || || ||||||| ||| | || | ||||| || || Sbjct 37853 TAGTGCTCGTCCATGCGGA-GACCAAGAATCGTACAAAGGTGCGCAAACTC--GGCATTT 37797 Query 182654 TGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAA 182713 | | || |||| |||| | || || || |||||| | ||| ||||| || || || Sbjct 37796 TTACCTA-GCTGCACCACAGTCGCATCACGCACATTCAGAAGTTTGCCGCGGAGGGGAAA 37738 Query 182714 CACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGA 182773 |||||||||||||||||| ||||| || | ||||| || || || || | || || || Sbjct 37737 CACACCGTAGTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGA 37678 Query 182774 ATCACCCTCCGTGACAATGAG 182794 |||||| || || | ||| || Sbjct 37677 ATCACCTTCAGTCAAAATTAG 37657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627988500933600