Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq369 194 2e-44 seq702 91.5 2e-13 >seq369 Length=26862 Score = 194 bits (214), Expect = 2e-44 Identities = 1110/1752 (63%), Gaps = 70/1752 (4%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| ||||||||||||| | ||||| || | ||||||| | | | Sbjct 6042 CCCCCAGCAGATGATCATGCGCGTGGCGCTGGGTATCCACAAGCAAGACATCCAGGCGGC 5983 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT---CACGCAACACCAACCCT 104337 || | || ||||| ||||| || |||||| || ||||| || || || || Sbjct 5982 ACTGCACACGTACGAGCTCATGTCACA---GATGTTCTTTACGCACGCGACGCCCACGCT 5926 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 ||| || || || || || | || || |||| |||||||| | |||| |||| Sbjct 5925 CTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTGGCCATGCAGGA 5866 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 ||||| || | || || || | || || | | |||| ||| ||||| |||||||| Sbjct 5865 CGACTCGATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGC 5806 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGA 104516 || |||||||| || || || | | | |||| || | || || || || | Sbjct 5805 CGGAGGTATTGGCATTAGTATGCACAACATCCGCGCCACGAACAGCT-ACATCCGCGGCA 5747 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || || ||| | || || || || ||||| | || || |||| ||| || |||| Sbjct 5746 CGAACGGATCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAACGACACGGCTCGCT 5687 Query 104577 ATGTAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 |||| | || | | ||| || || ||||| |||| |||| || ||||| |||| Sbjct 5686 ATGTGGACCAGGGCGGAGGCAAGCGCAAAGGATCGTTCGCCATCTACCTGGAGCCGTGGC 5627 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| || | | |||||||| ||| ||||| || || ||| |||| | || | | Sbjct 5626 ACGCCGACGTGTTCGAGTTCCTGGAGCTGCGTAAGAATCACGGTAACGA-GCTGCACCGC 5568 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || ||||| | || | |||||| ||| | || ||||| ||||||||| | || |||| | Sbjct 5567 GCGCGCGACTTGTTTTACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGCGTGGAGGCG 5508 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 | |||||| ||| || || || || || |||| || || |||| ||| ||| | ||| Sbjct 5507 AATGGCAAGTGGAGCCTGTTCTGCCCCAACGAGGCCCCCGGACTCTACGAGTGCTG-GGG 5449 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT 104871 || ||||| || | || ||| ||||||||| | || || || ||| |||| | Sbjct 5448 CGACGAGTTCGAGACGCTGTACGAGAAGTACGAGAAGGAGGGACGCGCGCGCAAGACGAT 5389 Query 104872 -----GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 ||||| || ||||| || || || | | || | ||||| || Sbjct 5388 CAACGCCCAGCAGC-----TGTGGTTCGCCATCCTGGACGCGCAGATTGAGACAGGCGTG 5334 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||| ||||| ||||| |||| ||| || || |||| | || | Sbjct 5333 CCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTCGGCACG 5274 Query 104987 ATCAAGAGTTC---CAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 105043 ||| | || ||| | || || || |||| | || |||||| | Sbjct 5273 ATC---CGCTCAAGCAACTTGTGCTGCGAGATTATGGAGTACACGTCGCCCGATGAGGTG 5217 Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA 105103 || ||||| ||||| || || | || |||||||||| |||||| || || Sbjct 5216 GCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGA-----GGATGGAG-TG 5163 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 || | || | || || |||| || || || || ||| ||| | || | || Sbjct 5162 TTCAACTACCAGAAGCTGTACGAGGTGACCAAGGTGGTGACCCGGAACTTGAATAAGGTC 5103 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 |||||| || | |||||||| ||| || || || || || ||| | ||||| || Sbjct 5102 ATTGATGTCAACTACTACCCCGTCGAGGAGGCACGCAAGTCCAACATGCGCCACCGCCCG 5043 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGAT 105283 ||||| | ||||| |||||||||||||||| ||| || || | | || || || Sbjct 5042 GTTGGTATTGGTGTCCAGGGTCTCGCGGATGCATTTATCCTCATGAACTATGCGTTCGAG 4983 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 | |||| ||| |||| | ||| || ||||| || || |||| || | Sbjct 4982 AGCCCGCAAGCCCGTGAACTCAACATGAACATCTTCGAGACGATCTACTACGCTTCTATG 4923 Query 105344 GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 ||| || ||| | || ||| || || || || || || |||| || || Sbjct 4922 GAGACGTCGATGGAGATCGCCAAGGAGCTGGGCCCGTACGAGACGTTCCAGGGCTCGCCT 4863 Query 105404 GCTTCA-CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC----- 105455 || || |||||| ||| || || || |||||| || | |||| | |||| Sbjct 4862 GC--CAGCAAGGGTATCTTCCAGTTCGACATGTGG---GGCGTGACCCCGTCTTCCGGTT 4808 Query 105456 ACTACGACTGGGAAGCTCTCAAG--GAACG-CATCAAGGAGAAGGGTCTTCGTAACAGTC 105512 | |||||| || |||||| ||||| |||| || | || | || ||| | Sbjct 4807 TGTGGGACTGGACTGCGCTCAAGGAGAACGTGATCA---AGCACGGCATACGCAACTCGC 4751 Query 105513 TCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 105572 ||||| ||||||| ||||| || || || || || || || ||||| || || || | | Sbjct 4750 TCCTCGTGGCTCCGATGCCCACTGCGTCGACGGCTCAGATTTTGGGCAACAACGAGTCCA 4691 Query 105573 TTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTG 105632 | || || || ||| ||||||| || | | || || || ||||| ||| | Sbjct 4690 TCGAGCCGTATACGTCGAACATGTACAACCGCCGCGTGCTGGCTGGTGAGTTCACGATCG 4631 Query 105633 TCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG---A 105689 | |||||| | ||| || | || || | ||| | || ||||| | || || | Sbjct 4630 TGAACAAGTACCTCATGAAAGAGCTGATCGAGCTGGGAATCTGGACGCCTGAGGTGCGCA 4571 Query 105690 AGGATCTCATGG-TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGA---TATTCCAAAT 105745 | | || ||| ||| ||||| ||| | || || ||| | ||||| | Sbjct 4570 ACCAGATCCTGGCTGA----CGGTGGCTCCGTGCAGAA---GGTGAAATCCATTCCGGAC 4518 Query 105746 GAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATG 105805 | | ||| || |||| ||||| |||||||||||| ||||| || | ||| || Sbjct 4517 CAGGTCAAGGAGAAGTACAAGACAGTGTGGGAAATCAAGCAGAAGGCCGTGTTGGACCTG 4458 Query 105806 GCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGT 105865 | || || ||||| || |||| || || || |||| | ||| | Sbjct 4457 TCGGCGGACCGTGGCGCCTACATTTGCCAGAGCCAGTCGTTGAACATTCACATTGCCGAC 4398 Query 105866 CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACG 105925 || ||||| ||| | | || |||||| | ||| ||||||||||| ||||| ||| Sbjct 4397 CCGACGATCAGTAAGTTGACGTCCATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACG 4338 Query 105926 GGGATGTATTAC 105937 || ||||| ||| Sbjct 4337 GGCATGTACTAC 4326 >seq702 Length=16857 Score = 91.5 bits (100), Expect = 2e-13 Identities = 203/300 (68%), Gaps = 11/300 (4%) Strand=Plus/Minus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 ||||| || || || ||||| ||||| |||| || | ||||| ||||| |||| || Sbjct 13844 GATCTGCCGGTCGAATCGACCGGGACGCAGGATAGCCTTGTCAAGAATATCGGCGCGGTT 13785 Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA 9633 ||| | || | || || | ||| ||| | | |||||||||||||| || Sbjct 13784 CGTACCAGCAAGCACCACCACACCC---TCACTCGAGTTGAAACCATCCATCTCCACCAG 13728 Query 9634 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACT-GCGTT 9692 || ||||||| || | ||| || || || || || | || | | || || || | Sbjct 13727 CAGCTGGTTAAGCGTGTTTTCACGCTCGTCGTT-GCCGCCAGAGAAGTTGCCCTTGCTTC 13669 Query 9693 GCTTTC---CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG 9749 || | |||| |||||||| ||||| ||||| || |||||||| || |||||| Sbjct 13668 GCGCACGGGCCACAGCATCAATTTCATCGATGAACACAATGCATGGAGCGTTCGCGCGAG 13609 Query 9750 CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9809 | | | || ||||| ||||||||| | ||||||||||| ||||| || | |||| Sbjct 13608 CCTCCTTGAACAGATCACGTACACGCGACGGACCCACACCAACGAACATTTCGATGAAGT 13549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583220401898840