Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq556 156 1e-32 seq5262 91.5 4e-13 seq5239 91.5 4e-13 seq972 91.5 4e-13 >seq556 Length=20046 Score = 156 bits (172), Expect = 1e-32 Identities = 519/791 (66%), Gaps = 15/791 (2%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || || || ||||| | || || ||| || || || || || || | Sbjct 6012 CCCGAGGAGATCTCGTCCATGGTGCTGGTCAAGATGCGCGAGATCGCGGAGGCCTACATT 5953 Query 349592 GGTGAAACAG-TAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 ||| || ||| | | | || || | || || || ||||| || || || | ||||| Sbjct 5952 GGT-AAGCAGGTGAAGAACGCAGTGGTGACGGTGCCGGCCTACTTCAACGACTCACAGCG 5894 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 || || || || || || |||||| || | || || || | || || || || Sbjct 5893 GCAGGCGACCAAGGACGCCGGAGCCATTGCCGGCCTGAACGTGCTGCGTATTATCAACGA 5834 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTAT 349770 ||||| || || |||||||| || || || || || | | ||| ||| | || | Sbjct 5833 GCCCACGGCCGCTGCAATTGCGTACGGTCTGGACAAGAAGGGTGG---AGAGCACAACGT 5777 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830 | || || || | || || || || ||||| || || || || || |||||||||| Sbjct 5776 GTTGATCTTCGACCTGGGCGGAGGAACGTTTGACGTCTCCCTCCTCACTATTGAAGAGGG 5717 Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 || || || || || || || || || ||||| ||||| || || ||||| || || || Sbjct 5716 TATCTTCGAGGTGAAGGCGACGGCAGGCGATACGCATCTGGGCGGCGAAGACTTCGACAA 5657 Query 349891 TCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAG 349949 || | || | || || | ||||||||||| |||| | | |||| || || Sbjct 5656 CCGCTTGGTCGAGTTCTTCGTGCAGGAATTTAAGCG-CAAGTATCGCAAGGATA-TGAAG 5599 Query 349950 AT-AATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008 | || | | || ||||| || || | || |||||||| |||||||||||| | | Sbjct 5598 GTGAACTCGCGTGCTATGCGCCGTCTCCGTACGGCGTGTGAGCGTGCTAAGCGTACACTG 5539 Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCT-GATGGCAAAGATTTCTT 350067 || | || | || | | || || ||||| || ||||| ||||| |||||| Sbjct 5538 TCGACGTCTGCGCAGGCGTACATCGAGATTGACTC-GTTGCTGGATGGTGTCGATTTCAA 5480 Query 350068 TTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAAT 350127 || | ||||| ||||| |||||||| || | ||| || | ||| | || || Sbjct 5479 CTCGACCATTACGCGTGCACGGTTTGAGGATCTTTGTGGTGAATTCTTTCGCAAGACGAT 5420 Query 350128 GGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGT 350187 ||| || |||| | || || ||| | || ||||||| | || | | || || Sbjct 5419 GGACCCGGTGGCGCAGGTTCTACGAGACTCGAAGCTGTCCAAGAGACAAGTGAACGAGGT 5360 Query 350188 AGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACT-ATCTGAGTTTT 350246 || | || || || || || ||||| || || ||||| ||||| | ||| || |||| Sbjct 5359 GGTGCTGGTCGGGGGCTCGACGCGTATCCCCAAGGTTCAGCAGTTGTTGATC-GACTTTT 5301 Query 350247 TTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCT 350305 | || || || || | ||| || ||||| || || || |||||||| || || |||||| Sbjct 5300 TCAACGGTAAGGAGCTGTTCAAG-TCAATCAACCCGGACGAAGCTGTCGCCTACGGTGCT 5242 Query 350306 GCTGTTCAGGC 350316 | || ||||| Sbjct 5241 ACAGTGCAGGC 5231 >seq5262 Length=1052 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 203 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 144 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 143 CCCTGCTTCTCCA 131 >seq5239 Length=2562 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 203 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 144 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 143 CCCTGCTTCTCCA 131 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1740 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 1681 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 1680 CCCTGCTTCTCCA 1668 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 2077 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 2018 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 2017 CCCTGCTTCTCCA 2005 >seq972 Length=16877 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 3351 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 3410 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 3411 CCCTGCTTCTCCA 3423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515146825934423