Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq369 315 8e-81 seq97 147 2e-30 seq391 140 4e-28 seq226 107 2e-18 >seq369 Length=26862 Score = 315 bits (348), Expect = 8e-81 Identities = 550/787 (70%), Gaps = 24/787 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 |||||||||| || ||||||||||| | ||| | || ||| | | | |||||| Sbjct 6028 TCATGCGCGTGGCGCTGGGTATCCACAAGCAAGACATCCAGGCGGCACTGC-ACACGTAC 5970 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | ||| || | || |||||||||||| ||||| || || || ||||| || ||| Sbjct 5969 GAGCTCATGTCACAGATGTTCTTTACGCACGCGACGCCCACGCTCTTTAACGCCGGCACG 5910 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 | || ||| ||||| ||||||||| |||| ||| |||| |||||||| || ||| Sbjct 5909 CCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTGGCCATGCAGGACGACTCGATTGAGGGC 5850 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 || ||||| ||||||||| |||| || ||||||||||||| | || ||||| || || Sbjct 5849 ATTTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCCGGAGGTATTGGCATT 5790 Query 53432 CAC-TGCTCGAACGTCCGTGC---GAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 ||| | ||| |||| || |||| || || ||| || |||||||| | Sbjct 5789 AGTATGCAC-AACATCCGCGCCACGAACAGCT-AC--ATCCGCGGCACGAACGGATCATC 5734 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | | || ||| | || ||||| | ||||||||| ||||||| || || || ||||||| Sbjct 5733 CAACGGGATCATCCCCATGCTGAGGGTCTTCAACGACACGGCTCGCTATGTGGACCAGGG 5674 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 || || |||||||| || ||||||||||||||||| |||||||||||||||||| | | Sbjct 5673 CGGAGGCAAGCGCAAAGGATCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGACGTGTT 5614 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC---CGTGACCT 53664 ||||| || ||||||||| |||||| ||| || ||| ||| | || || ||| | Sbjct 5613 CGAGTTCCTGGAGCTGCGTAAGAATCACGGTAAC---GAGCTGCACCGCGCGCGCGACTT 5557 Query 53665 GTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTG 53724 |||| ||||||||| | || || || |||||| | |||||| | | | |||| Sbjct 5556 GTTTTACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGCGTGGAGGCGAATGGCAAGTG 5497 Query 53725 GTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTA 53783 | |||| | ||||| |||||| |||||| ||| | | ||| || || || ||||| Sbjct 5496 GAGCCTGTTCTGCCCCAACGAGGCCCCCGGACTCTACGAGTG-CTGGGGCGACGAGTT-- 5440 Query 53784 ACGAGA---TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840 ||||| |||| || ||||| |||| ||| |||| | |||| || | Sbjct 5439 -CGAGACGCTGTACGAGAAGTACGAGAAGGAGGGACGCGCGCGCAAGACGATCAACGCCC 5381 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 || | ||| || ||||| | ||| | ||||| || ||||| |||| | Sbjct 5380 AGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATTGAGACAGGCGTGCCGTTCATGCTGT 5321 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCA 53960 ||||||| ||| |||| ||| |||||| ||||| ||||| ||| || |||| Sbjct 5320 ACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATCCGCTCAAGCA 5261 Query 53961 ACTTATG 53967 |||| || Sbjct 5260 ACTTGTG 5254 Score = 187 bits (206), Expect = 3e-42 Identities = 562/849 (66%), Gaps = 53/849 (6%) Strand=Plus/Minus Query 55106 AAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAAT 55165 ||||| |||| ||||| || ||||| |||||| |||| |||||| || || Sbjct 5150 AAGCTGTACGAGGTGACCAAGGTGGTGACCCGGAACTTGAATAAGGTCATTGATGTCAAC 5091 Query 55166 TACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGT 55225 |||||||| || | ||| |||||||||||| | || ||||| || | | || ||| Sbjct 5090 TACTACCCCGTCGAGGAGGCACGCAAGTCCAACATGCGCCACCGCCCGGTTGGTATTGGT 5031 Query 55226 GTACAGGGCTTGGCCGA--CATCT-TCATGATGCTCGGATTGCCCTTCGA---CTCGGAA 55279 || ||||| | || || ||| | || | ||| | ||| ||||| | || || Sbjct 5030 GTCCAGGGTCTCGCGGATGCATTTATCCTCATGAACTA--TGCG-TTCGAGAGCCCGCAA 4974 Query 55280 CCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGA 55338 || || ||| | ||| | |||||||| || || ||||||| || | | ||| Sbjct 4973 ---GCCCGTGAACTCAACATGAACATCTTCGAGACG-ATCTACTACGCTTCTATGGAGAC 4918 Query 55339 GTCGT--GTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGCT 55396 |||| | ||| | | | |||| ||| | ||||||||||||| | ||||| || Sbjct 4917 GTCGATGGAGATC-GCCAAGGAGCT-GGGCCCGTACGAGACGTTCCAGGGCTCGCCTGCC 4860 Query 55397 GACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGTCTGACCCCAT------GTTTG-- 55448 |||||| | |||||||||| | |||||| ||||||| | ||||| Sbjct 4859 AGCAAGGGTATCTTCCAGTTCGACATGTGGGGCG----TGACCCCGTCTTCCGGTTTGTG 4804 Query 55449 -------ACAA-GTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGT 55500 || | | ||| | || | | | ||| |||||||||| || ||||| Sbjct 4803 GGACTGGACTGCGCTCAAGGAGAACGTGATCAAGCACGGCATACGCAACTCGCTCCTCGT 4744 Query 55501 GGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCC 55560 ||| || ||||| || ||||||||||||||||| |||||||||||||| | ||||||| Sbjct 4743 GGCTCCGATGCCCACTGCGTCGACGGCTCAGATTTTGGGCAACAACGAGTCCATCGAGCC 4684 Query 55561 GTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATC---AA 55617 ||| ||| | ||||| ||| ||||| || || ||||||| ||| |||| || Sbjct 4683 GTATACGTCGAACATGTACAACCGCCGCGTGCTGGCTGGTGAGT---TCACGATCGTGAA 4627 Query 55618 CAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGAT---CAAGAC 55674 |||| ||||| | || || ||| || | | |||| || || | ||| | Sbjct 4626 CAAGTACCTCATGAAAGAGCTGATCGAGCTGGGAATCTGGACGCCTGAGGTGCGCAA-CC 4568 Query 55675 GGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGA---GATTCCTCTGCGTCTCAA 55731 ||| || || | |||| || ||||| ||||| || | ||||| | |||| Sbjct 4567 AGATCCTG-GCTG-ACGGTGGCTCCGTGCAGAAGGTGAAATCCATTCCGGACCAGGTCAA 4510 Query 55732 GGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGA 55791 ||||| ||| ||| |||||||| || |||||| || | ||| || || || Sbjct 4509 GGAGAAGTACAAGACAGTGTGGGAAATCAAGCAGAAGGCCGTGTTGGACCTGTCGGCGGA 4450 Query 55792 TCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACT 55851 ||||| || ||||| |||| |||||| ||||||| ||| | | || | | Sbjct 4449 CCGTGGCGCCTACATTTGCCAGAGCCAGTCGTTGAACATTCACATTGCCGACCCGACGAT 4390 Query 55852 GGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTA 55911 ||||||| || |||||||| |||| ||||||||||| ||||||||||| ||||| Sbjct 4389 CAGTAAGTTGACGTCCATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACGGGCATGTA 4330 Query 55912 CTATCTGCG 55920 ||| |||| Sbjct 4329 CTACATGCG 4321 >seq97 Length=51161 Score = 147 bits (162), Expect = 2e-30 Identities = 197/274 (72%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 152027 GCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 ||||||||||||| || | ||| || ||||||||||| || ||| || || || |||| Sbjct 38716 GCGTGAAGATGTAACGAGGGCTAGCGGCATCCTTGCCCCCCTGCAGACGGGTACCGAACT 38657 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || || || | | || |||||||||| |||||||| | ||| |||| || | Sbjct 38656 GACCTGAAGGGTACAATAGTGGAAGGTTGTTGGATCCCACGAAGTCCTGCGCCATGTTGA 38597 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 ||||||| ||||| ||||| || ||||| || ||||| ||||| | ||| | Sbjct 38596 CAATCGTCGAGTGCAGCGAAGCTTCGCCATGGTGGTAAGCCGTATGCTCACTGCAGTAGC 38537 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 |||||| ||| |||||||| | || |||| || || ||| ||||| ||| ||| || Sbjct 38536 CCGCCAGCTGTGCCACCTTAACCTCGCTCGTTAGCTTGCGCTTTAGACATGCGAAAAGCA 38477 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 |||| ||||| || |||| ||||| ||||| Sbjct 38476 CCTTACGCTGCGAGATCTTCAGGCCGTCAACCAC 38443 Score = 143 bits (158), Expect = 3e-29 Identities = 240/339 (71%), Gaps = 6/339 (2%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| || ||||||||||| || ||||| |||||||| || Sbjct 38714 GTGAAGATGTAACGAGGGCTAGCGGCATCCTTGCCCCCCTGCAGACGGGTACCGAACTGA 38655 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || || | ||| || |||||||||| ||||| |||| || |||| ||||||| Sbjct 38654 CCTGAAGGGTACAATAGTGGAAGGTTGTTGGATCCCACGAAGTCCTGCGCCATGTTGACA 38595 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCC 117483 ||||| || || || || |||||||| || ||||| ||||| | || |||||| Sbjct 38594 ATCGTCGAGTGCAGCGAAGCTTCGCCATGGTGGTAAGCCGTATGCTCACTGCA-GTAGCC 38536 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCAC 117543 ||||||||| |||||||| | || ||| || || ||| || || || ||| ||| Sbjct 38535 CGCCAGCTGTGCCACCTTAACCTCGCTCGTTAGCTTGCGCTTTAGACATGCGAAAAGCAC 38476 Query 117544 CTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAACGCTTGATGTCCT 117602 ||| ||||| |||||| || || |||| ||||| | ||| |||| | | ||| Sbjct 38475 CTTACGCTGCGAGATCTTCAGGCCGTCAACCAC-CGAGGGCAGCGACCGCTGGTTATCCG 38417 Query 117603 CAGCGCTAAAGTTGGCCAAG-TCCCGGTGGATGAAATCA 117640 || || ||| ||| ||| || |||| | |||||| Sbjct 38416 CA-TGCGAAAACTGGATAAGCTCGCGGTTCACAAAATCA 38379 >seq391 Length=25901 Score = 140 bits (154), Expect = 4e-28 Identities = 359/539 (67%), Gaps = 7/539 (1%) Strand=Plus/Plus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| || || | ||| || | || ||||| || || |||||||| || || ||||| Sbjct 738 GCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTT 797 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 || | ||| ||||||| |||||||| || |||||| ||||| || || || || Sbjct 798 TTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCACGGCAGCGAA 857 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAG--TCATCCAAGTCTGAGC-CCATTC 74944 || | ||||| | || | | | | || || ||| | | | ||||| || | Sbjct 858 CGCCAGCAGGCGCTCCGGGTAGGACGACACGCGAGGGTCACACCACT-TGAGCGCCCAGC 916 Query 74945 AGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTT 75003 | ||| | | |||| |||| || ||||| || | | ||| ||||||| Sbjct 917 GGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCAGGTGATCCTTCTCCA 976 Query 75004 CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063 ||| ||||||| | |||| |||| || |||||| |||||| || || |||| Sbjct 977 CGGCGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTCGA 1036 Query 75064 TGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAA 75122 | | ||| |||| | ||||||| | || ||||| | | ||| || || || || Sbjct 1037 T-AGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACCTCATTGCTGAAG 1095 Query 75123 TTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATT 75182 ||||| | | ||||| | ||||||||||| ||| ||||| || ||||| || Sbjct 1096 TTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAACGCCAGCACGTGC 1155 Query 75183 TTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAA 75242 ||||| ||||| ||||| | ||| || || || |||| ||||||||||| | ||| Sbjct 1156 TTGATGAAGTGACGCTCGTTGTCGGTCAGGTTCCCCCAGTCCTTCAGGTCGTGCACCAGG 1215 Query 75243 TCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGTC 75301 || | ||||||| |||||||||| | | |||||| ||||||| ||||| ||| Sbjct 1216 TCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACATCTGCCACACGTC 1274 >seq226 Length=34753 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| |||| ||||||||| || |||||||||||||| || Sbjct 23284 GTGAAAATATAACGAGCGCTGGCAGAATCCTTGCCGCCCATCAGACGCGTACCGAACTGA 23343 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | ||| || |||| | |||||| || || || | || |||| || || Sbjct 23344 CCGATAGGCGACAGCAGGTGGATGTTGTTACTTCCAACGAAATCCTGTGCCATATTCACG 23403 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || ||||| | ||| ||| || || |||||||| | ||||||| || ||||| Sbjct 23404 ATGCAGCCTTGCAAACTCTGCTCTCCGTGATGATACGCAGAGTGCTCCGAAACATAGCCA 23463 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGAC 117511 |||| ||| |||||||| | |||||| Sbjct 23464 GCCAACTGTGCCACCTTAAGCTCTGAC 23490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547178098451800