Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq138 149 5e-31 >seq138 Length=77892 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| |||||| | || ||| | || ||||| ||||| Sbjct 13190 ATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACTTTGGACGTGGAGCCGTCG 13131 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || |||||||||||||| |||||||| || || || || Sbjct 13130 GACTCGATCGACAATGTGAAGCAGAAAATTCAAGACAAGGAAGGCATCCCGCCTGACCAG 13071 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || ||| || || | ||| |||||| Sbjct 13070 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 13011 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || |||| |||| ||||| |||| |||||||| Sbjct 13010 ATCCAGAAGGAGTCAACGCTACACCTGGTGCTGCGTCTGCGCGGTGGCAT 12961 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| |||| |||||| | || ||| | || ||||| ||||| Sbjct 12963 CATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACTTTGGACGTGGAGCCGTC 12904 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | || || || |||||||||||||| |||||||| || || || || Sbjct 12903 GGACTCGATCGACAATGTGAAGCAGAAAATTCAAGACAAGGAAGGCATCCCGCCTGACCA 12844 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| || | || ||| || || | ||| ||||| Sbjct 12843 GCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 12784 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||| || |||| |||| ||||| | || || || Sbjct 12783 CATCCAGAAGGAGTCAACGCTACACCTGGTGCTGCGTCTACGTGGCGG 12736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434888276464320