Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq805 136 2e-27 >seq805 Length=27256 Score = 136 bits (150), Expect = 2e-27 Identities = 330/498 (66%), Gaps = 9/498 (2%) Strand=Plus/Minus Query 66242 TGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 66301 ||||| |||||| ||||||||| || | || | | ||||||||||| || ||||| || Sbjct 5496 TGCCTTCATCGATGCTGAGCACGCCATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGA 5437 Query 66302 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66361 | | ||| || || ||||||||| | ||||| | || ||||| |||| || Sbjct 5436 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCGCTGGAAATCGCGGA 5377 Query 66362 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 66421 | ||| || ||||| | | || | |||| || | ||| ||||||||| || || Sbjct 5376 CACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGT 5317 Query 66422 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 66481 ||| || |||||||| || || || || || ||| || | | ||||| ||||| || Sbjct 5316 GCCACGTGCCGAGCTTGAGGGTGAAATGGGAGACCAGCAGATTGCGCTGCAGGCGCGACT 5257 Query 66482 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGAC 66538 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 5256 GATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA- 5198 Query 66539 GCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGAC 66598 ||| | |||||| | ||| ||||| | |||| | || ||| | ||| Sbjct 5197 --TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGT 5143 Query 66599 CACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCAT 66658 ||| |||| || | || ||| | | ||||| || || ||| | || | || |||| Sbjct 5142 CACGTCGGGTGGTACAGCGTTGCGTTATTACGCGTCTGTGCGCCTTGACATTCGCCGCAA 5083 Query 66659 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAA 66718 | | |||||||| || || |||||||||| || |||||||| | ||| Sbjct 5082 GACGGCTATCAAGGAAGGTGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAA 5023 Query 66719 GAACAAGCTGGCCCCGCC 66736 |||||||||||| |||| Sbjct 5022 GAACAAGCTGGCATCGCC 5005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240943727745300