Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq382 192 5e-44 >seq382 Length=26401 Score = 192 bits (212), Expect = 5e-44 Identities = 395/583 (68%), Gaps = 6/583 (1%) Strand=Plus/Plus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGG 6603 |||| | ||||||||| || | |||||| || || | |||| | | | || ||||| Sbjct 6114 GCTCAACGTGGTTCAGATACACATGCGCGTCACCGATAACGT--GAATAAATTCACCAGG 6171 Query 6604 AACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAA 6663 || ||| | || || || | | |||||||| ||||| || |||||||| || Sbjct 6172 TTTCAGCCCTGCCACTTGTGCCACTAGTCGCGTGAGCAACGCGTAGCTTGCAATGTTAAA 6231 Query 6664 CGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATT 6723 |||||| || | ||||| || |||| || || || | ||| || |||| || || | Sbjct 6232 CGGCACACCAAGGCCCATATCGGCCGAGCGCTGGTACATCTGACACGACAATTCGCCGTC 6291 Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 ||| |||||||| ||||||| |||| ||||| || || |||||| | ||||| Sbjct 6292 CGCCACGTAGAACTGGCAGAACATGTGACACGGCGGCAGTGCCATCTCATTCAGATCAGC 6351 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGT-CATCAGGGTTCCGCTTCAAGGTGTCGA 6842 ||||||||||| ||| |||||||| | || |||| |||||| || | | | Sbjct 6352 AGGGTTCCACGCAGACAACACGATCCGGCGGTCCATC-GGGTTCGTACGCAGCTTATGAA 6410 Query 6843 TCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACT 6902 |||| | ||||||||| |||||||||| | || || || | | || |||| Sbjct 6411 TCACCTCAGTAAGCTGGTCCACTCCCTGTCCAGTGTAATCTGCGTGCATGTCCGTGTACT 6470 Query 6903 CCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAG 6962 || ||||| || | ||||||||| ||||||||||| || | || || | || || | Sbjct 6471 TGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACCGGTCCGAGATCACCTACTTCGCGCG 6530 Query 6963 ATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCC 7022 | || || || | |||||| | || || ||||| | |||||||||| | | Sbjct 6531 TCTGCAATCCTCGGCTATCCAGATACTCCCGGGACCCATTCCCGTCCCAGATGTGAATGT 6590 Query 7023 CCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGA 7082 || | ||| | | | ||||| | || || | ||||||||||||||||| Sbjct 6591 CCTTCTGCTGCAGCGTGTGCGCGCTCGTGTCGCCGCTGATAAACCACAGCAGCTCCTCCG 6650 Query 7083 CCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 ||||||| |||| |||| || || ||||| |||||||| || Sbjct 6651 CCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAA 6693 Score = 192 bits (212), Expect = 5e-44 Identities = 395/583 (68%), Gaps = 6/583 (1%) Strand=Plus/Minus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || |||||||| ||||| || || |||| |||| ||||||| ||||||||||||||| Sbjct 6693 TTCCCGCTGCTCACGACCAAGCGCGTGTTCTGGCGCGGCGTGGCGGAGGAGCTGCTGTGG 6634 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 || | || || | ||||| | | | ||| | || | | ||||||||| Sbjct 6633 TTTATCAGCGGCGACACGAGCGCGCACACGCTGCAGCAGAAGGACATTCACATCTGGGAC 6574 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 | | ||||| || || | |||||| | || || || | | || || | || || Sbjct 6573 GGGAATGGGTCCCGGGAGTATCTGGATAGCCGAGGATTGCAGACGCGCGAAGTAGGTGAT 6514 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 | || ||||||||||| ||||||||| | || ||||| || |||| || | | Sbjct 6513 CTCGGACCGGTCTACGGCTTCCAGTGGCGCCATTTTGGCGCCAAGTACACGGACATGCAC 6454 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 || || || | |||||||||| ||||||||| | ||||| | | || | Sbjct 6453 GCAGATTACACTGGACAGGGAGTGGACCAGCTTACTGAGGTGATTCATAAGCTGCGTACG 6394 Query 34520 AACCCTGATG-ACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 ||||| |||| || | |||||||| ||| ||||||||||| ||||| | ||| Sbjct 6393 AACCC-GATGGACCGCCGGATCGTGTTGTCTGCGTGGAACCCTGCTGATCTGAATGAGAT 6335 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTG 34638 ||| || || ||||| |||| ||||||| |||||||| ||| | || || |||| || Sbjct 6334 GGCACTGCCGCCGTGTCACATGTTCTGCCAGTTCTACGTGGCGGACGGCGAATTGTCGTG 6275 Query 34639 CCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTA 34698 ||| | || || || |||| || ||||| | || |||||||| |||||||| || || Sbjct 6274 TCAGATGTACCAGCGCTCGGCCGATATGGGCCTTGGTGTGCCGTTTAACATTGCAAGCTA 6215 Query 34699 CGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCA 34758 ||| |||||||| | | || || || | ||| || ||||| || | | | Sbjct 6214 CGCGTTGCTCACGCGACTAGTGGCACAAGTGGCAGGGCTGAAACCTGGTGAATTTATTC- 6156 Query 34759 TACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGC 34799 |||| | || || |||||| | || ||||||||| | |||| Sbjct 6155 -ACGTTATCGGTGACGCGCATGTGTATCTGAACCACGTTGAGC 6114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448231352225520