Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 199 9e-46 seq138 161 2e-34 seq33 141 2e-28 seq1607 132 1e-25 seq738 120 7e-22 >seq1 Length=129477 Score = 199 bits (220), Expect = 9e-46 Identities = 217/288 (75%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| ||| |||||||| | ||||| | || ||| | | Sbjct 128008 AACTTTATATTTAATTTTTAGTGCTTTTGCTGGTATTGTTGGTACAACTTTATCTCTTTT 128067 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || | |||||||| || ||| |||||| || | |||||| ||| | || Sbjct 128068 AATTAGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGTAATCATCAATTATA 128127 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || |||||| |||| || ||||| ||| | ||| |||| ||||| |||||||| | | | Sbjct 128128 TAATGTTATTGTTACTGCACATGCTTTTATCATGGTTTTTTTTTTAGTTATGCCCGCTTT 128187 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| || ||||| || || ||||||||||| ||||| |||||||||||||| Sbjct 128188 AATTGGGGGTTTTGGTAATTGGTTTGTACCTTTAATGATAGGTGCACCTGATATGGCTTT 128247 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 |||| | | || |||||||||||||| ||| |||| || | ||||| Sbjct 128248 TCCACGTATGAATAATATAAGTTTTTGGTTATTACCTCCAGCTTTATT 128295 Score = 114 bits (126), Expect = 3e-20 Identities = 102/125 (82%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 125296 AGCCTATTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 125355 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| ||| | || ||||||||||| |||| || ||||||| |||||||||||||| | Sbjct 125356 CCAA-ACTTTTTTAAAGGCAGCAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCA 125414 Query 6865 GTAAT 6869 | ||| Sbjct 125415 GCAAT 125419 Score = 104 bits (114), Expect = 6e-17 Identities = 133/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | |||||| ||| ||| ||||||| | || || | |||||| Sbjct 128514 AAAGGTAATCTATGAAAACTTAAACCGGGTGCTCGCATATTATAAATAGTTGAAATAAAA 128455 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || || || |||| | ||||| ||||||| | |||||||||||| || |||||||| Sbjct 128454 TTAATTGCACCTAATAATGAAGAAATACCTGTTAAATGTAAACTAAAAATAGCTAAATCT 128395 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || || || || |||| |||| |||||| || ||||| || || || Sbjct 128394 ACTGAAGGTCCTGAATGGGCTTGTACACTAGA---TAACGGTGGATAAACAGTCCAACCT 128338 Query 371542 GT 371543 || Sbjct 128337 GT 128336 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 121845 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 121904 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 121905 GTAACATGATGTATAGGGTCTGACAC 121930 Score = 100 bits (110), Expect = 7e-16 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 125983 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 125924 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| || |||||| | || | ||||| ||| | || Sbjct 125923 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 125864 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 125863 AACGCGTTAGCT 125852 Score = 96.9 bits (106), Expect = 8e-15 Identities = 84/103 (82%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 || ||||||||||| || || |||||||||||||| | | |||||| ||||| || ||| Sbjct 128691 TCTGGATGACCAAAGAACCAAAATAAATGTTGATATAATACAGGATCACCTCCACCAGAT 128632 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 || ||| |||| |||||| ||||||||||| ||||| |||| Sbjct 128631 GGGTCATAAAAAGAAGTATTTAAATTTCTATCGGTTAACAACA 128589 >seq138 Length=77892 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 12741 ACGTAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 12800 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| |||||||| || || || || ||||| ||||| || || Sbjct 12801 GCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 12860 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| || || ||||||||| ||||| | ||| || | |||||||| || Sbjct 12861 TTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAA 12920 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||||||||||| || | ||| | ||||| Sbjct 12921 AGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 12962 Score = 161 bits (178), Expect = 2e-34 Identities = 170/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 12970 CGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 13029 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| |||||||| || || || || ||||| ||||| || ||| Sbjct 13030 CGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCT 13089 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| || || ||||||||| ||||| | ||| || | |||||||| || Sbjct 13090 TCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAA 13149 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||||||||||||||| || | ||| | ||||| || Sbjct 13150 GTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 13193 >seq33 Length=70540 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 19142 CGAAGACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 19201 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| | || || ||||| || || || ||| Sbjct 19202 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCCT 19261 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||||||||| || |||||||| ||||| | ||| || | |||||||| | | Sbjct 19262 TCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGC 19321 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||||||||| |||||||| || || Sbjct 19322 GTGATCGTCTTCCCCGTCAACGTCTT 19347 Score = 140 bits (154), Expect = 8e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 19369 ACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 19428 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| | || || ||||| || || || || Sbjct 19429 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCC 19488 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||| || |||||||| ||||| | ||| || | |||||||| | Sbjct 19489 TTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAG 19548 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||||||| |||||||| || || | || | ||||| || Sbjct 19549 CGTGATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCATGTT 19593 >seq1607 Length=6526 Score = 132 bits (146), Expect = 1e-25 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || || || ||||||||||| || |||||||||||||| |||||||||||||||||||| Sbjct 3252 AAAATCTGTCCATCAGTAATTGAAATAACATTTGTAGGAATATAAGCAGAAACATCACCA 3311 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||||||||||| || ||||| || |||| ||| || ||||||| |||||||| Sbjct 3312 GCTTGTGTTTCGATAATTGGTAATGCGGTTAATGAACCCCCACCAATTTTTTTATT 3367 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 5014 CAACACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATA 5073 || || | ||||| | || || || |||||||||| | |||| |||||||||||||||| Sbjct 3585 CACCATTACAATATTTAGCACCTTATACAGGTTGTGCTTTAGGTGAATATTTTAGAGATA 3526 Query 5074 ATGGTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 |||||||||||||| | || | || ||||||||| ||||||| Sbjct 3525 ATGGTAAACATGCTGTTATTTTTTATGATGATTTATCTAAACAA 3482 >seq738 Length=22000 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| ||||||||||| || || || ||||| ||||| || |||||| Sbjct 12269 CCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCC 12210 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | |||||||| | |||| Sbjct 12209 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCGGATGGCTCCACGTCCAGCGTG 12150 Query 225676 ATCGTCTTGCCCGTCA 225691 || ||||| ||||||| Sbjct 12149 ATGGTCTTTCCCGTCA 12134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192446537365454