Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq382 161 7e-35 seq386 84.2 2e-11 >seq382 Length=26401 Score = 161 bits (178), Expect = 7e-35 Identities = 436/663 (66%), Gaps = 13/663 (2%) Strand=Plus/Plus Query 27142 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 27201 || || || ||||| | ||| || || || ||||| || | ||| | ||| || || Sbjct 6110 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCACCGATAACGTGAATAAATTCACCA 6169 Query 27202 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 27261 |||| ||||| | || || |||| | |||||| | | |||||| || |||||| Sbjct 6170 GGTTTCAGCCCTGCCACTTGTGCCACTAGTCGCGTGAGCAACGCGTAGCTTGCAATGTTA 6229 Query 27262 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA 27321 || || || || || ||||| || |||| | |||||| | ||||||||| | || || Sbjct 6230 AACGGCACACCAAGGCCCATATCGGCCGAGCGCTGGTACATCTGACACGACAATTCGCCG 6289 Query 27322 TCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 || ||||| ||||| || | ||| ||||| || || ||||| || || Sbjct 6290 TCCGCCACGTAGAACTGGCAGAACATGTGACACGGCGGCAGTGCCATCTCATTCAGATCA 6349 Query 27382 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT-GTTC----CTGATGA 27436 |||||||| || ||| | ||| || | ||| ||||| || | || |||| Sbjct 6350 GCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCATCGGGTTCGTACGCAGCTTATGA 6409 Query 27437 GGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCG 27496 ||| | | ||||| ||||| ||| || | ||| ||| | |||||||| Sbjct 6410 AT--CACCTCAGTA---AGCTGGTCCACTCCCTGTCCAGTGTAATCTGCGTGCATGTCCG 6464 Query 27497 TGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 27556 |||||| || || ||||| | ||| ||||| ||||| |||||||| || || || ||| Sbjct 6465 TGTACTTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACCGGTCCGAGATCACCTACTT 6524 Query 27557 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 27616 | | || || || | | |||| | | || | ||| || || |||||||||| | Sbjct 6525 CGCGCGTCTGCAATCCTCGGCTATCCAGATACTCCCGGGACCCATTCCCGTCCCAGATGT 6584 Query 27617 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCT 27676 | |||||| ||| | | | | ||| || |||| ||||||||||||| Sbjct 6585 GAATGTCCTTCTGCTGCAGCGTGTGCGCGCTCGTGTCGCCGCTGATAAACCACAGCAGCT 6644 Query 27677 CCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC---TGTCCCT 27733 ||||| | ||| | ||| || || | |||||||||||| || || ||| | | | Sbjct 6645 CCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTTTCTC 6704 Query 27734 TGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTCTC 27793 | || | | | || ||| | |||||||| ||||| || |||||||| | ||||| Sbjct 6705 TCAGACTGAAGCTCATCTGCGCTCCAAACACCGACAACGTGCCAGTGCCCGTGCGGTCTC 6764 Query 27794 CCC 27796 ||| Sbjct 6765 CCC 6767 >seq386 Length=26155 Score = 84.2 bits (92), Expect = 2e-11 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 44827 TCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTCG 44886 ||||||||| | || || ||||| | |||| || | ||||| || | | ||| Sbjct 10078 TCCACCTCCTGCACCTCCGGGTACTCGATCTTCTCAAGGATCAGCTGCGCCACGCGGTCC 10137 Query 44887 CCCCTCTTGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCC 44946 |||| ||||||| | ||| | | || ||| ||||| || ||||| | |||||| Sbjct 10138 CCCCGCTTGACCGGGAAGTCCTCAGTCGCATGGTTGAACAGGATCACGCCCACGTTGCCG 10197 Query 44947 CTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCCG 45006 | |||||||| || | ||| ||||| || ||| || || || || || || || ||| Sbjct 10198 CGGTAGTCGGCATCGATCACACCGGCGCCAGTGTCGATGAACTTCTTAAGTGCGAGTCCG 10257 Query 45007 GACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGACCAGGTCCGTCTTT 45066 || | || ||||| | |||| || | ||| | ||| |||||||||||||| Sbjct 10258 GAGCGCGGCGCCACGCGCGCGTAACATCCAGCGGGAACGGCCACCACCAGGTCCGTCTTG 10317 Query 45067 ACCAGGGCCCTGCC 45080 || ||| | |||| Sbjct 10318 ACGAGGCCTTTGCC 10331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369482246832371