Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq33 120 7e-22 >seq33 Length=70540 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || |||||||| || || ||||| || ||| Sbjct 19359 CAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCTTCGGAC 19300 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || || || ||||| ||||| |||||||| |||||||| Sbjct 19299 TCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAG 19240 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 19239 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 19180 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 19179 CAGAAGGAGTCTACCCTGCACCTGGT 19154 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || |||||||| || || ||||| || ||| Sbjct 19587 CAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCTTCGGAC 19528 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || || || ||||| ||||| |||||||| |||||||| Sbjct 19527 TCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAG 19468 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 19467 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 19408 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 19407 CAGAAGGAGTCTACCCTGCACCTGGT 19382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203645742231954