Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq8569 136 8e-27 seq8986 113 1e-19 seq8697 93.3 9e-14 seq8320 93.3 9e-14 >seq8569 Length=27754 Score = 136 bits (150), Expect = 8e-27 Identities = 670/1051 (64%), Gaps = 49/1051 (5%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| ||| || Sbjct 16595 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCGGTCTCGTCGAG 16654 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 ||| |||||||||||||||||| || || |||||||| || | |||||| || || Sbjct 16655 GTGAGACTCGATGTGGTGGAAAGCGTGTTGGGCCACGTAGGCGAAACGCATGGAAGGGTG 16714 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || || | |||| || | | ||||| |||| ||| || | ||| Sbjct 16715 CTTCCACACTTGGCCACTCGTGGGCTCAACCTCACCCGTCAGCATCTTGATCATGGTAGA 16774 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATAC-CTGGGCAT 319228 || || |||||||| ||| | ||| |||| | | || | | | | | || Sbjct 16775 CTTACCGGCACCGTTGGGGCCAAGCACGGCGATAC---GGCTCGACAAAGCGCACGTCAC 16831 Query 319229 T--CACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-A 319285 | | ||||| | | || || || || |||| | | | ||| ||| | Sbjct 16832 TGAAATGTTGTTGATCGACGGCTTCGGGGTGCCAGGGTACTGGTA-CGAACAGTTCGTCA 16890 Query 319286 GCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAAC- 319344 ||||||| |||| |||| | | ||||| || ||||| |||||| Sbjct 16891 AACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCCGGGAACG 16950 Query 319345 ----TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTT 319400 | ||||| ||| | ||| || ||||||| | | || || || Sbjct 16951 TGAACTTCACGTTGTC--AGACTC---CAGCTCGTAGTAGGCCTTGGCCTCAGGCTTCTG 17005 Query 319401 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 319460 || |||||| | || || || |||||||| |||||||||| | || ||||| || Sbjct 17006 CTCCACGAAAGCAGAAAGGTTGCCCTTGTAGATCTTCAGCTTACG---AGTCTCGTAGTG 17062 Query 319461 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 319520 || || ||| || || | ||||||||| || |||||||| ||||| || | || || Sbjct 17063 AATGATGTTGGTACAGACCGTGTCGAGGAAACCAGAGTCGTGCGACACCATGATGCTCGT 17122 Query 319521 AACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATG 319580 |||| | ||| | ||||||| | || ||| ||||| ||| | || Sbjct 17123 CACGTTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCGACGTTCTTAACATCCAAGTG 17182 Query 319581 GTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGC 319640 ||| |||||||| |||||||||| | | || ||| | ||||| ||||| ||||| | Sbjct 17183 GTTCGTCGGCTCATCAAGAAGCAAGATGTCGGCCTTCTGCAGCATGGCACGAGCAAGTTC 17242 Query 319641 GAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAATATC 319700 |||||||| ||||| || || ||||| ||| | || ||| || || || Sbjct 17243 AAGTTTCATCTTCCAACCACCCGAAAGGGTGCCTA------CACCCTGGGCCTGCATCTC 17296 Query 319701 -------AAAGCCAACCGATT-CTAGAGTAGTTACG-ATCTTTTCACGAGACCAAATGTT 319751 ||| ||| || || | ||||| || | | || ||||||| | |||| Sbjct 17297 CGGGGTGAAACCCA--CGCTTCCGAGAGT-GTCCTGCACCTCGTCACGAG---GAGTGTT 17350 Query 319752 TTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCC 319811 ||| | | ||||| |||||||| | | | | | || || || | Sbjct 17351 ---CTTGAGGTCCTCATCCACCAGGATGAAGTCCACCACGGACAACTCAGCCTCCGAAGC 17407 Query 319812 GTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAAC--ATCCGCAGAGGGGAACCCTTCA 319869 | || | ||| || ||| | |||| |||| | | | || |||||| || || Sbjct 17408 CTGCAGGTTGTGCTCAACGAACACAGTCTTCAGCTCGGACCGGC--TGGGGAAGCCCTCG 17465 Query 319870 AGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACAC 319929 ||||| ||||| |||||||||||||| || || ||||| ||||| || || ||| Sbjct 17466 AGCTGACCGTTGGAGATAGCGCGCATCAGCGTCGACTTACCACAACCGTTGGGGCCGCAC 17525 Query 319930 AGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCA 319989 |||||||| |||| || || |||||| | || | ||||||||| ||||| | ||| Sbjct 17526 AGACCGTAACGGTGGCCACGCTTCAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATACCA 17585 Query 319990 CCATATGCCAGAGAAAATTCACAATCACACA 320020 ||||| || || || || || || | |||| Sbjct 17586 CCATAGGCGAGCGAGAACTCGCAGTTGCACA 17616 >seq8986 Length=36306 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 21243 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 21184 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 21183 CCCACGGTGGGC 21172 >seq8697 Length=2752 Score = 93.3 bits (102), Expect = 9e-14 Identities = 140/194 (72%), Gaps = 10/194 (5%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||| ||| || ||| | || |||||||| ||||| ||||||||| | Sbjct 553 CTGATCGGCATGAACTCTGCGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCT- 495 Query 230506 TTTGTTGCACT---TGGTTACGAGAAAG-TGTACAACTCTAAGAACCCCTTTGCATTTAT 230561 |||| ||| ||| | || ||| | |||||| |||||||| || | | || Sbjct 494 ---GTTGTACTCGCTGGGTGCGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGAT 438 Query 230562 GGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA-TC 230620 ||| | || ||||| || || |||||||||||||| || ||||| || | || || || Sbjct 437 GGACATGATCTCGCTACAGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTACTC 378 Query 230621 AGAGGCCTGGTGTG 230634 ||| |||||||| Sbjct 377 CAAGG-CTGGTGTG 365 >seq8320 Length=26225 Score = 93.3 bits (102), Expect = 9e-14 Identities = 140/194 (72%), Gaps = 10/194 (5%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||| ||| || ||| | || |||||||| ||||| ||||||||| | Sbjct 553 CTGATCGGCATGAACTCTGCGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCT- 495 Query 230506 TTTGTTGCACT---TGGTTACGAGAAAG-TGTACAACTCTAAGAACCCCTTTGCATTTAT 230561 |||| ||| ||| | || ||| | |||||| |||||||| || | | || Sbjct 494 ---GTTGTACTCGCTGGGTGCGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGAT 438 Query 230562 GGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA-TC 230620 ||| | || ||||| || || |||||||||||||| || ||||| || | || || || Sbjct 437 GGACATGATCTCGCTACAGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTACTC 378 Query 230621 AGAGGCCTGGTGTG 230634 ||| |||||||| Sbjct 377 CAAGG-CTGGTGTG 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057701491088570