Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq8697 109 6e-19 seq8320 109 6e-19 >seq8697 Length=2752 Score = 109 bits (120), Expect = 6e-19 Identities = 132/178 (74%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || || ||||| | ||||| || ||||| |||||||| || || ||||| Sbjct 936 ATGTATGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTCGATAGCGATCTGG 995 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTC--CGCCA 16589 || || |||||||| |||||||||| | || || || | || |||| ||||| Sbjct 996 AAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACCTCATTGCTGAA--GTTCATCGCCA 1053 Query 16590 GGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 ||||||| |||||||| ||||| || ||||| || ||||||| | |||||| ||||| Sbjct 1054 GGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAACGCCAGCACGTGCTTGATGAA 1111 >seq8320 Length=26225 Score = 109 bits (120), Expect = 6e-19 Identities = 132/178 (74%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || || ||||| | ||||| || ||||| |||||||| || || ||||| Sbjct 936 ATGTATGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTCGATAGCGATCTGG 995 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTC--CGCCA 16589 || || |||||||| |||||||||| | || || || | || |||| ||||| Sbjct 996 AAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACCTCATTGCTGAA--GTTCATCGCCA 1053 Query 16590 GGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 ||||||| |||||||| ||||| || ||||| || ||||||| | |||||| ||||| Sbjct 1054 GGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAACGCCAGCACGTGCTTGATGAA 1111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511356616565480